Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25540 94 / 1e-24 CID6 CTC-interacting domain 6 (.1) AT5G11440 86 / 2e-21 CID5, IPD1 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1) AT2G26280 43 / 6e-05 CID7 CTC-interacting domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021960 [exp] 295 / 9e-104 AT5G25540 98 / 3e-26 CTC-interacting domain 6 (.1) Lus10009796 [exp] 45 / 1e-05 AT2G26280 701 / 0.0 CTC-interacting domain 7 (.1) Lus10038081 [exp] 45 / 2e-05 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246600 [exp] 102 / 2e-27 AT5G11440 103 / 2e-28 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1) Potri.018G047700 [exp] 42 / 0.0002 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10041253 pacid=23179647 polypeptide=Lus10041253 locus=Lus10041253.g ID=Lus10041253.BGIv1.0 annot-version=v1.0 ATGAAGTCTGGAACTTCTAGTTTAAACCCATATGCAACCTCATATGTACCTATTTTTAAGAGGAAGGTAGGTGAGCATACTCAAGCTCATGGGCCACCAG TTTCCAAAGCTTGGCAGAGTTACAATCACTATGGACCTGAGCATGCTGCTGAGAGCAGGCAACACAATGACCAGGGGTTTTATGGTTCATCTTCGCGAAG TCCTGATGACAAAATAGATAAGCAAATGACAGAGGAAGGATTTGACATGGATTTGGAATTCCTTCGGATGTCATTCCCTGATGTATCTTCTGAATCACTT GTGGATGTCTATGCTGCAAATAATGGAGACCTGGAAAATAGTTTTCACATGCTTAACCAACTCGAGTTTGACAATCCCACAAATCTTCCAGACACGCTGG AAATCGGTGATGTTCCCGAGTCCGAGTCATCTCTAAAACAGAAGAATGTGGTTGGTGAAGCCAGCAGTGGCATTTCATCAAGTTCCCCAGCCTCTGCAAC AGTTGCGAGGGTAAATGAATGTCGAGAAATGTCTGAATAG
AA sequence Show only first row Show all	>Lus10041253 pacid=23179647 polypeptide=Lus10041253 locus=Lus10041253.g ID=Lus10041253.BGIv1.0 annot-version=v1.0 MKSGTSSLNPYATSYVPIFKRKVGEHTQAHGPPVSKAWQSYNHYGPEHAAESRQHNDQGFYGSSSRSPDDKIDKQMTEEGFDMDLEFLRMSFPDVSSESL VDVYAANNGDLENSFHMLNQLEFDNPTNLPDTLEIGDVPESESSLKQKNVVGEASSGISSSSPASATVARVNECREMSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10041253 [exp]	0	1
AT2G31130			unknown protein		Lus10013926 [exp]	2.2	0.8406
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	4.2	0.8320
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10034074 [exp]	5.5	0.7787
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	7.0	0.8085
AT4G39235			unknown protein		Lus10004160 [exp]	12.0	0.8067
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	14.7	0.8142
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	17.3	0.7833
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	19.2	0.8000
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	19.7	0.8095
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	21.4	0.8249

Compare expression of checked genes

Lus10041253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.