Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25530 358 / 1e-123 DNAJ heat shock family protein (.1) AT2G20560 318 / 4e-108 DNAJ heat shock family protein (.1) AT3G08910 315 / 5e-107 DNAJ heat shock family protein (.1) AT1G59725 302 / 8e-102 DNAJ heat shock family protein (.1) AT5G01390 301 / 1e-101 DNAJ heat shock family protein (.1.2.3.4) AT3G47940 286 / 3e-95 DNAJ heat shock family protein (.1) AT4G28480 226 / 6e-72 DNAJ heat shock family protein (.1.2) AT2G20550 211 / 5e-67 HSP40/DnaJ peptide-binding protein (.1.2) AT1G10350 212 / 2e-66 DNAJ heat shock family protein (.1) AT1G44160 171 / 3e-50 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021961 [exp] 515 / 0 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10008109 [exp] 353 / 4e-115 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1) Lus10013981 [exp] 305 / 1e-102 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10030803 [exp] 301 / 2e-101 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 300 / 3e-100 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10015402 [exp] 296 / 3e-99 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10027803 [exp] 232 / 4e-74 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 231 / 6e-74 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10017687 [exp] 227 / 3e-72 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034600 [exp] 403 / 2e-141 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 364 / 4e-126 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 310 / 4e-105 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 310 / 9e-105 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 308 / 4e-104 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 307 / 2e-103 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 301 / 6e-102 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 234 / 6e-75 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 232 / 3e-74 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 217 / 2e-68 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041254 pacid=23179793 polypeptide=Lus10041254 locus=Lus10041254.g ID=Lus10041254.BGIv1.0 annot-version=v1.0 ATGGGTTTGGATTACTACAATATCCTGAAGGTGGACAGGAGTGCATCAGAGGATGATCTGAAGAAATCATACAGAAAGTTGGCAATGAAATGGCATCCTG ACAAGAACCCCAACAACAAGAAAGAAGCTGAAGCCAAATTCAAACAGATCTCCGAAGCTTACGATGTGCTGAACAACCCACAAAAGAGGGCAATCTACGA TCAGCGTGGAGAAGAAGGGCTGAACGAGATTCCACCGTCTGTATTTGGGAATGGGAGTAATCATGGACCAAACGATTTCAATTCAAGAAATGCAGAAGAC ATTTTTGCTGAGTTCTTCGGGAGCAGCCCATTTGGGTTTGGCGGAGCTGGAAGAGCATCCACCAGGTTCCAGTCGGAAGGTGCAGCAGCAGCTGAAACCG CCACCCCGCCGCCTCTTAAGAAGCCGCCTCCGGTGGAGAGCAAATTGCCTTGCAGACTTGAAGAACTTTATTCCGGCTCCACCAGGAAAATGAAGATCTC CAGAACAGTCGTTGACGCCCATGGGAGGCAGACGCAAGAAACAGACATAGTGACGATAGACGTGAAGCCAGGGTGGAAGAAGGGAACAAAGATAACATTC CCAGACAAAGGCAACGAGCAGCACAACCAGCTACCAGCAGATTTAGTGTTCGTCATCGACGAGAAACCTCACGACGTGTACAAAAGGGATGGAAACGATT TGATGATCAGCCGCCAGGTCACTCTTGCGGAAGCATTGGGAGGAACAACCCTCAACATCAACACCCTCGACGGCCGGACCGTTTCGATCCCGGTGACACA CGTTGTGAGCCCTGGCTATGAGATGCTCGTCTCCGGCGAAGGTATGCCGATTGCTAAAGAGCCGGGGAACAGGGGAGACTTGAGGATTAAGTTTGAGGTT AAGTTTCCTACCAGGTTGACTATGGAGCAGAGAGCTGGGCTCAAGCGTGCTTTAGGAGATTGA
AA sequence Show only first row Show all	>Lus10041254 pacid=23179793 polypeptide=Lus10041254 locus=Lus10041254.g ID=Lus10041254.BGIv1.0 annot-version=v1.0 MGLDYYNILKVDRSASEDDLKKSYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLNNPQKRAIYDQRGEEGLNEIPPSVFGNGSNHGPNDFNSRNAED IFAEFFGSSPFGFGGAGRASTRFQSEGAAAAETATPPPLKKPPPVESKLPCRLEELYSGSTRKMKISRTVVDAHGRQTQETDIVTIDVKPGWKKGTKITF PDKGNEQHNQLPADLVFVIDEKPHDVYKRDGNDLMISRQVTLAEALGGTTLNINTLDGRTVSIPVTHVVSPGYEMLVSGEGMPIAKEPGNRGDLRIKFEV KFPTRLTMEQRAGLKRALGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	0	1
AT3G09110			Protein of unknown function (D...		Lus10003163 [exp]	1.7	0.7743
					Lus10008346 [exp]	4.2	0.6043
AT3G05550			Hypoxia-responsive family prot...		Lus10015191 [exp]	6.3	0.6543
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	6.6	0.7135
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10002803 [exp]	9.8	0.7019
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003296 [exp]	12.2	0.6715
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023540 [exp]	18.3	0.7056
AT5G53480			ARM repeat superfamily protein...		Lus10031905 [exp]	20.8	0.6226
AT2G44210			Protein of Unknown Function (D...		Lus10005502 [exp]	21.7	0.6256
AT4G37810			unknown protein		Lus10011570 [exp]	23.5	0.6878

Compare expression of checked genes

Lus10041254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.