Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14200 77 / 5e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021962 [exp] 275 / 5e-84 AT4G14200 79 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146200 [exp] 150 / 8e-40 AT4G14200 96 / 6e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G235900 [exp] 137 / 3e-35 AT4G14200 97 / 4e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041255 pacid=23179588 polypeptide=Lus10041255 locus=Lus10041255.g ID=Lus10041255.BGIv1.0 annot-version=v1.0 ATGATTTCTTTCGCCGGGTTGACTCGGCGCCTCACTCAGAAGCTCTCCCTGAAGCCACAGGTTTGTTCGCTTCTCTTTTTTGCTCTGTTTTCTTTTCAGT TACAGAAGAAGGGGCTAAGTTGTCTTTTCACTTTTGTTCACTTTACAGAGGAAGCGGGTCGTGGAGCTGATGAGAGCCATGGCGGAGAAGGAGGAGTGTT CGTTTGCAATAGATGTGGATGGCATTACGCTAACCAAAACCCCAGCTCAAGACACAGGCGTGCTCATCGCAAGATCTGTGGAACCCTTCCAGGCTACAGT AGCGCTGTCGCCGCCGTTCCAGCGTCTCCGCCGCAGCTTCAGACTTTCTATTCCTTTGTTTCCGCCGATGACCATCCCTCCGACGACGATGGCGAATTCA AGACCCCCAGTCCTAGTGTATTGGAGAGGAGTCAAATGGAGATGGGCAGTAGTGGTGGAACGGGTGGAAAATCTTGTAGATCAGAAGATGAGGTATTCTC GGATGCTGTTACTGACTTTGTGGATGCTGCTGGATCATCTACTTTGGGACTTCAACAGCACAAGGATATCGAGGGTCCAGTTGATGTGGTATCTACGCAA TCGGATATGCCAGTAAGTGTGGATGCTGAAGGAGGATCAAGTAAAAGCAGCAGGAAGATGGCAAATGCTCCACCTGAGAGACAAGAAACAGATATGTTTG AGGCTCCATCTTTCATGACACTTGTTGAGCCAATAAAAGGCAGTGCTTCAGAGATCCAGAATCCTCAGCAGTCAAAAGCTGGTGCTAGTCCTGCTCAAGC TGGGTGGTTCCCTTCAATTACGAATGTGGTAAATGAGTCTGAAGGGAGGAAGAAGAACGAAGAGATAATAGTAAAGGCGACGACTCATCGCAGTGGTGGA GGGACGCAGTTGAAAAGCCTATTGGGGGAGGCAAATCAGGAAATGGAATCGAGATTGCCGAAAAAGGAAAACACAGGGATCGTCAAAACCATAGCAGCAG GAGGAGAGGTGAGAAGAATGAAGGAGGAAGGTGATGTTGGTGGGAAAGAATGGAGTTCTTCACCTGATAGGGAGAAGAGGAAAGTAAAGGGAAGGCCTTA CTGGACACATTTGGTCTGCTGTGCATCTGTGAACTGA
AA sequence Show only first row Show all	>Lus10041255 pacid=23179588 polypeptide=Lus10041255 locus=Lus10041255.g ID=Lus10041255.BGIv1.0 annot-version=v1.0 MISFAGLTRRLTQKLSLKPQVCSLLFFALFSFQLQKKGLSCLFTFVHFTEEAGRGADESHGGEGGVFVCNRCGWHYANQNPSSRHRRAHRKICGTLPGYS SAVAAVPASPPQLQTFYSFVSADDHPSDDDGEFKTPSPSVLERSQMEMGSSGGTGGKSCRSEDEVFSDAVTDFVDAAGSSTLGLQQHKDIEGPVDVVSTQ SDMPVSVDAEGGSSKSSRKMANAPPERQETDMFEAPSFMTLVEPIKGSASEIQNPQQSKAGASPAQAGWFPSITNVVNESEGRKKNEEIIVKATTHRSGG GTQLKSLLGEANQEMESRLPKKENTGIVKTIAAGGEVRRMKEEGDVGGKEWSSSPDREKRKVKGRPYWTHLVCCASVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	0	1
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	1.0	0.8488
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	2.0	0.8113
AT4G34540			NmrA-like negative transcripti...		Lus10023558 [exp]	3.2	0.7849
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	4.2	0.7859
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	5.5	0.7957
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	6.2	0.8396
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036889 [exp]	6.2	0.7370
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038285 [exp]	10.2	0.7409
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	11.5	0.8142
AT3G27520			unknown protein		Lus10003664 [exp]	11.7	0.7557

Compare expression of checked genes

Lus10041255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.