Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05520 1307 / 0 Sec23/Sec24 protein transport family protein (.1) AT3G23660 1295 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT4G14160 1259 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT2G21630 853 / 0 Sec23/Sec24 protein transport family protein (.1) AT5G43670 671 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G01810 124 / 4e-29 Sec23/Sec24 protein transport family protein (.1) AT2G27460 50 / 7e-06 sec23/sec24 transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021963 [exp] 1563 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 1012 / 0 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 1003 / 0 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 665 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 607 / 0 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 548 / 0 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 495 / 7e-166 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 140 / 7e-34 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 137 / 5e-33 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307400 [exp] 1337 / 0 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 1335 / 0 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G178500 [exp] 1028 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 707 / 0 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 682 / 0 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 662 / 0 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 133 / 8e-32 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 131 / 4e-31 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.009G163300 [exp] 51 / 3e-06 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.004G201800 [exp] 51 / 4e-06 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10041256 pacid=23179683 polypeptide=Lus10041256 locus=Lus10041256.g ID=Lus10041256.BGIv1.0 annot-version=v1.0 ATGTCGGAAATGGCGAACACAGATCCCGAAGGACTTGACGGAGTTCGGATGACGTGGAACGTCTGGCCTCGTACCAAGGTGGAAGCTAGCAAATGCGTTA TCCCTCTGGCAGCCTGCATCTCTCCGATCCGCGATCACCCAGATATCCCAACCCTACCTTACGCCCCTCTGCGATGCAAGACCTGCGCTTCCCCTCTCAA CTGCTTCGCCCGCGTCGATTTCAACGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCATTTCCCTACCCATTATGGCATGATCTCCGACACC AATCTCCCCGCCGAGCTCTACCCTCAATACACCACCGTCCAGTACACTTTACCTAACCCTAGTGTTAATCCGCAGATGTCTGCCTTTGATCCGTCCGCCG CTCCTTCTCCTCCGACTCCGTCGCCGGTTTTCCTCTTCGTCCTCGACACTTGTATGATCGAGGAGGAATTCGGCTTCGTCAGATCCGCATTGAAGCGCGC CATCGGTCTGTTGCCTGATAATGCTCTTGTTGGATTGGTGACGTTTGGCACCCAAGCTCATGTCCATGAGCTAGGATTCTCCGATTTGTCCAAGGTGTAT GTTTTCAGGGGGACCAAGGAGATCACTAAAGATCACGTTATGGAGCAATTGGGTCTGACATTTCCCGGCCGTAGATCTCCTGCTGCTGCTACTTCTGCAG CTGCAGCTTACCAACACAAAGGAGCGATGCCCAATGGCTTCCCCGGTTCTGGAGTCACCAGGTTCTTGTTACCTGCATCCGAGTGCGAATTTCCCCTCAA TTCGCTCCTGGATGAGCTGCAAACAGACCAATGGCCTGTCCCACCAGGGACCCGGGCCTCAAGGTGCACTGGCGTTGCTTTGAGTGTTGCAGTTGGACTG CTTGGAGCTTGTGTCCCTGGCACTGGTGCAAGAATTATCGCTTTGGTTGGAGGTCCATGCACTGAGGGTCCTGGCACGATTGTATCGAAGGATTTGTCTG AGCCTGTACGTTCACATAAGGATCTTGACAAGGATGCAGCTCCATACTTCAAGAAAGCAGTCAAGTTTTATGACGGCCTGGCAAAACAGCTTGTCAGCCA GGGGCATGTGTTGGATGTTTTTGCATCGGCGCTTGATCAGGTTGGAGTTGCTGAAATGAAAGTTGCAGTTGAGAGAACTGGTGGCCTTGCTGTTCTATCA GAGAGCTTTGGGCACTCTGTATTTAAGGACTCTTTCAAGCGTGTATTTGCAGACGGGGAACATTCTCTTGGCCTCTGTTTCAATGGAACACTTGAGGTTA ACTGTTCGAAGGATATCAAAATTCAGGGCATAATTGGTTCCTGCACATCAATGGACAAGAAAGGGCCTAGTGTTGCCGATACCGTAATTGGGGAAGGCAA TACTACAGCTTGGAAGATGTGTGGGCTTGATAAGAGTACTTGCTTGACTGTGTTTTTTGATCTTTCATCAAGTGATAGATCAAATGCTCCTGGCACTGTA AATCCACAACTATATCTACAGTTCCTTACTAGCTATCAAAATCCTGAAGGTCAAACACTGCTTCGGGTGACAACTGTAACTAGGAGCTGGATAGATAGTG CTGTTAGTTCAGAGGAATTAGTACAAGGTTTTGATCAAGAGACGGCGGCTGGAGTTATGGCAAGACTGGCGTCCTTAAAAATGGAGATAGAGGAAGGATT TGATGCAACTCGTTGGCTGGACCGGAACCTGATTCGTTTGTGTTCCAAGTTTGGGGACTATCGGAAAGATGATCCATCATCCTTCACATTGAACCCTTGC TTTTCATTGTTCCCCCAGTTCATGTTTAATCTTAGACGATCACAGTTTGTACAGGTTTTCAACAACAGCCCAGATGAAACGGCTTATTTCCGCATATTAT TAAACAAAGAAAACATTACAAACGCTGCTGTCATGATCCAACCGTCATTGATATCTTATTCCTTCAACTCATTACCTCAACCCGCACTTCTAGATGTTGC TTCTATTGCAGCTGATCGGATCCTTTTGTTAGATTCTTACTTCAGTGTTGTCATTTTCCATGGTATGACAATAGCACAGTGGCGTAACATGGGTTACCAG AATCAGGCAGAGCACCAGGCATTTGCGCAGCTTTTACAAGCACCTCAAGATGACAGTCAGATGATCATCCAGGAGCGATTCCCAGTTCCTAGGCTAGTGG TGTGTGATCAGCATGGATCCCAGGCAAGGTTCTTGTTAGCGAAATTGAACCCGTCAGCAACATACAACAATGCTCACGAGATGGCGGCTGGGTCGGATGT GATATTCACGGATGATGTTAGCCTTCAAGTATTCTTCGAGCATTTACAGAGGCTAGCGGTGCAGTCCTGA
AA sequence Show only first row Show all	>Lus10041256 pacid=23179683 polypeptide=Lus10041256 locus=Lus10041256.g ID=Lus10041256.BGIv1.0 annot-version=v1.0 MSEMANTDPEGLDGVRMTWNVWPRTKVEASKCVIPLAACISPIRDHPDIPTLPYAPLRCKTCASPLNCFARVDFNAKIWICPFCFQRNHFPTHYGMISDT NLPAELYPQYTTVQYTLPNPSVNPQMSAFDPSAAPSPPTPSPVFLFVLDTCMIEEEFGFVRSALKRAIGLLPDNALVGLVTFGTQAHVHELGFSDLSKVY VFRGTKEITKDHVMEQLGLTFPGRRSPAAATSAAAAYQHKGAMPNGFPGSGVTRFLLPASECEFPLNSLLDELQTDQWPVPPGTRASRCTGVALSVAVGL LGACVPGTGARIIALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPYFKKAVKFYDGLAKQLVSQGHVLDVFASALDQVGVAEMKVAVERTGGLAVLS ESFGHSVFKDSFKRVFADGEHSLGLCFNGTLEVNCSKDIKIQGIIGSCTSMDKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVFFDLSSSDRSNAPGTV NPQLYLQFLTSYQNPEGQTLLRVTTVTRSWIDSAVSSEELVQGFDQETAAGVMARLASLKMEIEEGFDATRWLDRNLIRLCSKFGDYRKDDPSSFTLNPC FSLFPQFMFNLRRSQFVQVFNNSPDETAYFRILLNKENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNMGYQ NQAEHQAFAQLLQAPQDDSQMIIQERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05520			Sec23/Sec24 protein transport ...		Lus10041256 [exp]	0	1
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021963 [exp]	1.0	0.9579
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	3.5	0.9143
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	5.9	0.8840
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10017329 [exp]	6.3	0.8953
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	9.9	0.8963
AT3G12110		ACT11	actin-11 (.1)		Lus10016558 [exp]	11.0	0.8801
AT2G15240			UNC-50 family protein (.1)		Lus10027865 [exp]	11.7	0.8514
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	12.4	0.8709
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	12.7	0.8824
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10024002 [exp]	12.8	0.8668

Compare expression of checked genes

Lus10041256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.