Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31980 72 / 1e-16 AtCYS2 PHYTOCYSTATIN 2 (.1) AT3G12490 59 / 2e-11 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) AT2G40880 54 / 5e-10 ATCYSA, FL3-27 cystatin A (.1) AT5G47550 54 / 7e-10 Cystatin/monellin superfamily protein (.1) AT4G16500 49 / 2e-08 Cystatin/monellin superfamily protein (.1) AT5G05110 43 / 2e-05 Cystatin/monellin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026779 [exp] 52 / 2e-09 AT3G12490 129 / 2e-39 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Lus10008702 [exp] 53 / 4e-09 AT3G12490 241 / 9e-81 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Lus10026117 [exp] 50 / 7e-08 AT3G12490 261 / 2e-88 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149300 [exp] 99 / 2e-27 AT2G31980 90 / 1e-23 PHYTOCYSTATIN 2 (.1) Potri.002G235800 [exp] 98 / 7e-27 AT2G31980 96 / 5e-26 PHYTOCYSTATIN 2 (.1) Potri.009G022300 [exp] 55 / 9e-11 AT3G12490 134 / 4e-41 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.001G225800 [exp] 55 / 1e-10 AT3G12490 142 / 4e-44 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.003G192200 [exp] 57 / 2e-10 AT3G12490 303 / 6e-105 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.006G033201 [exp] 56 / 2e-10 AT3G12490 251 / 8e-86 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.001G032900 [exp] 54 / 1e-09 AT3G12490 276 / 2e-95 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.016G030900 [exp] 54 / 2e-09 AT3G12490 244 / 5e-82 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0121 [flax] [poplar] Cystatin PF00031 [flax] [poplar] Cystatin Cystatin domain
Representative CDS sequence Show only first row Show all	>Lus10041257 pacid=23179818 polypeptide=Lus10041257 locus=Lus10041257.g ID=Lus10041257.BGIv1.0 annot-version=v1.0 ATGAGGCATTTGGCGGGGTTAGCCGTAGCAGCAATATTACTAGTGTTATTAACAGTTGGTGTTGAAGGTGGTTACAGAGGGAGAATGGTTGGAGCGAGAA GGGAAGTGAAGGATGTGAAGAGCAACAAGGAAATCCAAGACCTGGGCCGCTTCTCCGTCAACGAGTTCAACACTAAGTTGATTGGTGATGAGAAGCAGAA GAAAGAACTGCTGCTGAGTTTTGAGGAGGTGATTGAGGCCCAGACGCAGGTGGTATCGGGGATCAAGTACTACCTCAAGATCCTCGCTGCTCCACTACAT AACAACTCCAACAAGCAGCAGCTTTATGATGCGGCCGTGGTGGTGAAGCCTTGGCTCAACCACCGCTCCATCACTCTCCTCCACTTCCGTCCTTCTTCCA CTACGGCAACCGTTTGA
AA sequence Show only first row Show all	>Lus10041257 pacid=23179818 polypeptide=Lus10041257 locus=Lus10041257.g ID=Lus10041257.BGIv1.0 annot-version=v1.0 MRHLAGLAVAAILLVLLTVGVEGGYRGRMVGARREVKDVKSNKEIQDLGRFSVNEFNTKLIGDEKQKKELLLSFEEVIEAQTQVVSGIKYYLKILAAPLH NNSNKQQLYDAAVVVKPWLNHRSITLLHFRPSSTTATV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Lus10041257 [exp]	0	1
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10002524 [exp]	2.2	0.9082
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	2.4	0.9026
AT3G61700			Plant protein 1589 of unknown ...		Lus10039340 [exp]	3.0	0.8118
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10031464 [exp]	5.1	0.7936
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	6.3	0.8387
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	6.7	0.8744
AT1G57750		MAH1, CYP96A15	MID-CHAIN ALKANE HYDROXYLASE 1...		Lus10002523 [exp]	12.0	0.8509
AT2G39170			unknown protein		Lus10037961 [exp]	17.7	0.6941
					Lus10012394 [exp]	20.5	0.7929
					Lus10033149 [exp]	21.5	0.7895

Compare expression of checked genes

Lus10041257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.