Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10830 441 / 4e-155 Z-ISO1.2, Z-ISO1.1, Z-ISO 15-cis-zeta-carotene isomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021965 [exp] 590 / 0 AT1G10830 491 / 1e-174 15-cis-zeta-carotene isomerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146900 [exp] 461 / 5e-163 AT1G10830 512 / 0.0 15-cis-zeta-carotene isomerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF07298 [flax] [poplar] NnrU NnrU protein
Representative CDS sequence Show only first row Show all	>Lus10041258 pacid=23179922 polypeptide=Lus10041258 locus=Lus10041258.g ID=Lus10041258.BGIv1.0 annot-version=v1.0 ATGGCATCTTCTCAAACTCTCCTCCTCTCTAATCCTCTCTCCGTCCTCCGCCGCCGCCCAACCACCACCGCCGCCGTCCCATCCTCCACTTACTTCCCCT CTGCAACTCTATTTCCATCCTCAGCCTTCAACCACCACCACCATCTTCTTCTTCTTCTCCGTTCCTCCTCTTCCAGTTCCATCCGCCGCAATTATCTTCT ACCTCCTCCTTGCAGTTCCGTTCAGGATGTTGACTCCTCCGTCGACGACCCTCCGCCAATCCCGGAAGACGCAGCTCTTTTCCGATTGGACAATCAAAAG CTCTCCTCCTGGCTCTACTTCTCCGTCATCTTGGGAGTCGTCCTTTTCCTCCTCAACCTCCTCTGGATAGACAACTCCACTGGCTACGGCAAAGCCTTCG TCGACGCTGTTTCCTCCGTCTCCGACAGCTCCGAGGTCGTAATGCTGATTCTCATCCTGGCATTCGCACTTGCCCATAGTGGATTGGCCAGCCTCAGAGA TGCCGGAGAGAAGCTCATCGGAGAACGAGCATTTCGTGTTCTGTTTGCTTCCACGTCTCTTCCTTTGGCCGTTACCACTGTTGTGTACTTCATCAATCAC AGGTATGACGGGACACAATTATGGCAGCTTCAAACTGTCCCTGGGATGCATGAATTCGTCTGGCTCTCCAACTTCATCTCTTTCTTCTTCCTCTACCCTT CAACCTTCAATCTATTGGAGGTTGCAGCCGTTGACAAGCCAAAGATGCATCTTTGGGAAAATGGAATCATCAGAATCACAAGGCACCCCCAGATGGTTGG CCAAGTGATGTGGTGTGTGGCACATACACTGTGGATGGGGAACTCGGTGGCCGTGGCTGCCTCGGTTGGTCTGATCGCACACCATCTTTTCGGAGTGTGG AACGGAGATAGGAGGCTGGCAGCAAGGCACGGAGAAGCATTCGAAGCAGTGAAGGAGAGGACGAGTGTAGTTCCATTTGCGGCCATTCTTGATGGTCGAC AAAAGCTCCCCAAAGATTACTACAAGGAGTTCTTGAGGCTACCTTATCTCACCATCACTGCGATAACTTTAGGCGCATATTTTGCACACCCGCTGATGCA GGCTTCTAGCTATGGACTCCATTGGTAA
AA sequence Show only first row Show all	>Lus10041258 pacid=23179922 polypeptide=Lus10041258 locus=Lus10041258.g ID=Lus10041258.BGIv1.0 annot-version=v1.0 MASSQTLLLSNPLSVLRRRPTTTAAVPSSTYFPSATLFPSSAFNHHHHLLLLLRSSSSSSIRRNYLLPPPCSSVQDVDSSVDDPPPIPEDAALFRLDNQK LSSWLYFSVILGVVLFLLNLLWIDNSTGYGKAFVDAVSSVSDSSEVVMLILILAFALAHSGLASLRDAGEKLIGERAFRVLFASTSLPLAVTTVVYFINH RYDGTQLWQLQTVPGMHEFVWLSNFISFFFLYPSTFNLLEVAAVDKPKMHLWENGIIRITRHPQMVGQVMWCVAHTLWMGNSVAVAASVGLIAHHLFGVW NGDRRLAARHGEAFEAVKERTSVVPFAAILDGRQKLPKDYYKEFLRLPYLTITAITLGAYFAHPLMQASSYGLHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10041258 [exp]	0	1
AT1G44000			unknown protein		Lus10042769 [exp]	4.0	0.8256
AT1G44000			unknown protein		Lus10029738 [exp]	5.8	0.8576
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	8.8	0.7925
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	17.8	0.8300
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	21.1	0.7610
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10041445 [exp]	24.0	0.8032
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	25.1	0.8280
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10020812 [exp]	27.1	0.7151
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	28.9	0.8029
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	30.7	0.8228

Compare expression of checked genes

Lus10041258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.