Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23670 493 / 5e-158 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT4G14150 490 / 5e-154 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G19050 280 / 1e-77 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 271 / 1e-74 POK1 phragmoplast orienting kinesin 1 (.1) AT3G44050 268 / 2e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G20150 223 / 8e-60 Kinesin motor family protein (.1) AT3G10180 178 / 3e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 171 / 1e-43 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 170 / 8e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 169 / 1e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021969 [exp] 1625 / 0 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10017113 [exp] 276 / 2e-76 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10027934 [exp] 275 / 4e-76 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10018341 [exp] 275 / 5e-76 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 274 / 1e-75 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10016589 [exp] 271 / 2e-75 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10008438 [exp] 266 / 2e-73 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013377 [exp] 261 / 2e-71 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 189 / 1e-48 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235500 [exp] 534 / 2e-170 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.014G149000 [exp] 532 / 1e-169 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.004G193700 [exp] 280 / 4e-78 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G156000 [exp] 275 / 1e-76 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 275 / 6e-76 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.001G360200 [exp] 268 / 3e-74 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.005G150800 [exp] 178 / 2e-45 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 177 / 3e-45 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 176 / 1e-44 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 174 / 4e-44 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10041262 pacid=23180028 polypeptide=Lus10041262 locus=Lus10041262.g ID=Lus10041262.BGIv1.0 annot-version=v1.0 ATGAAGCACTTCATGCTTCCCAGGAACCCCGTCCTGCGGGAACCTAACAGCGATTCACCTACTCCTCCACCCCCTTCCTCTCTCAAATCCAAGCCCAATT TGTCTCCGTCCCCCTCCATTCCTTCCCGACGGCACAAATTCTCCAACGAGAATGTTCCTCCACCGTCAGATCTCCACTCCTCACCCTCTCCAGCTTCTAA GATCAGGACTAATCTCCCTCCCAAGCCTCCTACCTCTAATCCTCTTAAGCGCAAGCTTGCCATGGACGCTGCTCAAGATTCATCGCCTCACGATTCTGGT GTCCAGGTAATTGTCAGAATGCGACCATTAGGTAAGGATGATGAAGGAGCCCTGACAGTGCAGAAATTATCTAACGATTCACTATGTATTAATGGACACA ACTTCAGATTTGATTCTGTTGCTGATATGGAAGCAACACAGCAAGAAATTTTCCAGCTAATAGGAGCCCCTCTCGTTGAGAATTGTCTAGCTGGATTTAA CAGTTCAGTATTTGCTTATGGACAGGAGCAAGTCAAGCATGCTGATAGGCAACTGAAGTATCAGTGCCGATGCTCTTTCTTAGAGATAAGAGAAGATGTG AAGTCTGGTGTATATGTAGAAAATCTTACCGAGGAGTATGTGTTCACATTAAAAGATGGATTGTCCAATAGGAGGACTGGTGCAACCAGTGTAAATGCAG AAAGTTCTCGCTCACATAGTGTCTTCACCTGCATTGTTGAATCCCGGTGCAAGAGCATGGCAGACGGCATAAGCAGCTTAAAGACAAGTAGAATAAATCT TGTCGATCTTGCTGGGTCAGAGCGACAGAAACTGACCGGCGCTGCAGGCGAAAGATTAAAAGAAGCTGGGAATATCAATCGTTCTCTCTCACAGCTTGGA AACTTGATAAATATACTAGCTGAAGTTTCACAGACAGGAAAACAGAGGCATATCCCTTACAGAGACTCCAAGTTGACATTTCTGTTGCAGGAGTCACTTG GAGGTAATGCAAAGCTAGCAATGGTCTGTGCAATCTCACCTGCACAAAGCTGTAAGAGTGAGACTTTCAGCACTTTGCGATTTGCACAACGTGCCAAGGC AATAAAAAATAAAGCAGTTATTAATGAAGAGATGGAGGATGATGTGAATCATCTGCGAGGAGTCATACAGCAGCTTAGGTTGGATGAAGATGGTGATGAG GAAATGGAAATCGATGAGGAAGCTGTTGAAAAGTTCTGTGCAGCATCTGAAGATCAGGCTCTGAAGAACAGCAGAAGAGTTATGGAACAAGGTGCCGAGG ACACTGATGTGGACATGGAGGAAGGCACACCAGAAAAAGTTGAGGACCGGGATATTATTATTGGAGGTAACACAACTAAAAGAGTTCGTGCATCAACCGA TCAGTTAGCAGCAAGCATCCACCGGGGCCTTGAAATTTTGGACAGCCATCCAAGAAGTTCAGCATTCAGGCGTTCAGCATTTAGATTTTCTTATGTGCCT GCCGAAAATAAGCCAAGCCCCATCATTGAAAAACTTGATGTTGGAGTCCAGACAATCTCTCAAGATGATGATCAGCTAGATTTTATATGCAAGATATGCA AAGGAAAAGCAGAACTAGAACAGTTAAATGGCATTGACGAGAGCTCAAACCTTCCGCTGGTACCTGTGGAAGACTCGGGATCAGAAGAAAAGTCCACAAT GCAAGTCCCCAAAACTGTGGAGAACGTTTTAGAGTTAAATGACACTGATGACAACTCAAACCTTCAGTTGGTACCTGTGGATGGCTCAGGATCAGCAGAA AAGTCCAAAATGCAAGTCCCTAAAGTGCAACAATACAAGCATGAAAGGGACTGCAATGCTGTAATTAGTGAAACAAAGGAGGACAAAATTCTCCGTCTTG AAGGCCTTATGGATGGTGTTCTACCCACAGAGGAGTTCGTGGAGGAAGAGTATGCATCACTCATTCACGAGCACAAGCTTCTCAAGGAAAAATACGATAA CCATCCTGAAGTCTTAAGGGTGAACATTGAGCTCAAAAGAGCTCAGGAAGAGCTTGAGAACTACAGAAATTTCTGTGATCTGGGGGAAAGAGAAGTCTTG TTGGAGGAGATTCAGGACTTGAGAAACCAGCTGCAGTACTACGTAGACTCTTCATCAGCAGCCTCTAATAAAAGGAGATCTTTGTTGCAGCTGACCTATT TGAATGAACAACCTGTTGTGGCTCCCCCAGACCTTGACACAATTCCTGAGTCAACTGAGGATGGCGCTCAAGAGAAACTTGAGCAGGAGAGGTTGCGCTG GACTGAAGCCGAGAGCAAGTGGATCTCGCTTGCCGAGGAACTGAGGGCTGAGCTTGATGCTACGAGAAATTTAGCTGAGAAACAAGCAAAGGAATTAGAA ATAGAGAAGAAGTGTGCAGAAGAGTTGAAGAAAGACATGCAAATGGCCATTGAAGGCCAGACACGCATGCTCGAACAACATGCAGATCTGGAAGTGAAGC ATATTCAGCTACTTGCAAGACACAGGAAGATTCGGGAAGGAATCGAAGATGTAAAGAAAGCAGCAGCTAGAGCAGGGGTGAAGGGTGCCGAGTCCAGGTT CATCAATTCCCTGGCTGCGGAAATTTCAGCATTGAGGGTTGAAAAGGAGAAAGAACGGCGATACTACAGGGAAGAAATCAGAGCACTCGAGGCTCAACTG AGAGATACAGCACACGCTGTACAATCGGCCGGCGAGTTACTGGTCAGACTCACAGAAGCAGAACAAGCTGTTGCTGTTGCCCAGGTGAGATCTCAAGATC ATCATCATGAACGGGTTCTGCGAGCGGAGGTGGAATCTGAAAATGCACTGAAGAAGATCCAGAAGTTGAAGAGGAAGCACGAAGAAGAGATTGAAACGCT GAAGATGGTGATGGGGGAGTCGCGGCTGCCTAAAGAGGCTATACCACCGCCACCGGCAGTATGGTCGCCGTCGCCGGCAGCAGCAGCATCAACAGGTTCT GAAGAAGTTTTGACGGCGAAATACGATGAAGGTGAGGGAGAAGAGTGGAGAGGGGAGGAGTTGGATGCGTCGTCGTGGTTCTCAGGGTATGATCGTTGCA ATATATGA
AA sequence Show only first row Show all	>Lus10041262 pacid=23180028 polypeptide=Lus10041262 locus=Lus10041262.g ID=Lus10041262.BGIv1.0 annot-version=v1.0 MKHFMLPRNPVLREPNSDSPTPPPPSSLKSKPNLSPSPSIPSRRHKFSNENVPPPSDLHSSPSPASKIRTNLPPKPPTSNPLKRKLAMDAAQDSSPHDSG VQVIVRMRPLGKDDEGALTVQKLSNDSLCINGHNFRFDSVADMEATQQEIFQLIGAPLVENCLAGFNSSVFAYGQEQVKHADRQLKYQCRCSFLEIREDV KSGVYVENLTEEYVFTLKDGLSNRRTGATSVNAESSRSHSVFTCIVESRCKSMADGISSLKTSRINLVDLAGSERQKLTGAAGERLKEAGNINRSLSQLG NLINILAEVSQTGKQRHIPYRDSKLTFLLQESLGGNAKLAMVCAISPAQSCKSETFSTLRFAQRAKAIKNKAVINEEMEDDVNHLRGVIQQLRLDEDGDE EMEIDEEAVEKFCAASEDQALKNSRRVMEQGAEDTDVDMEEGTPEKVEDRDIIIGGNTTKRVRASTDQLAASIHRGLEILDSHPRSSAFRRSAFRFSYVP AENKPSPIIEKLDVGVQTISQDDDQLDFICKICKGKAELEQLNGIDESSNLPLVPVEDSGSEEKSTMQVPKTVENVLELNDTDDNSNLQLVPVDGSGSAE KSKMQVPKVQQYKHERDCNAVISETKEDKILRLEGLMDGVLPTEEFVEEEYASLIHEHKLLKEKYDNHPEVLRVNIELKRAQEELENYRNFCDLGEREVL LEEIQDLRNQLQYYVDSSSAASNKRRSLLQLTYLNEQPVVAPPDLDTIPESTEDGAQEKLEQERLRWTEAESKWISLAEELRAELDATRNLAEKQAKELE IEKKCAEELKKDMQMAIEGQTRMLEQHADLEVKHIQLLARHRKIREGIEDVKKAAARAGVKGAESRFINSLAAEISALRVEKEKERRYYREEIRALEAQL RDTAHAVQSAGELLVRLTEAEQAVAVAQVRSQDHHHERVLRAEVESENALKKIQKLKRKHEEEIETLKMVMGESRLPKEAIPPPPAVWSPSPAAAASTGS EEVLTAKYDEGEGEEWRGEELDASSWFSGYDRCNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Lus10041262 [exp]	0	1
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Lus10021969 [exp]	1.0	0.9446
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10008091 [exp]	2.4	0.8537
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002276 [exp]	16.5	0.7402
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10034172 [exp]	16.6	0.8289
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10040117 [exp]	19.7	0.8426
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006853 [exp]	21.7	0.8371
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	26.5	0.8369
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	31.9	0.8329
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10031098 [exp]	41.5	0.8336
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	44.8	0.7550

Compare expression of checked genes

Lus10041262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.