Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22700 289 / 2e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G11540 62 / 4e-10 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 45 / 0.0001 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021972 [exp] 399 / 2e-140 AT1G22700 312 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10021336 [exp] 60 / 2e-09 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 59 / 3e-09 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013661 [exp] 47 / 2e-05 AT5G63200 801 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 42 / 0.0004 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10003576 [exp] 43 / 0.0005 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085200 [exp] 350 / 4e-120 AT1G22700 324 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.013G114500 [exp] 346 / 1e-118 AT1G22700 321 / 7e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.016G075700 [exp] 60 / 1e-09 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 59 / 3e-09 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G092000 [exp] 43 / 0.0003 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10041265 pacid=23179839 polypeptide=Lus10041265 locus=Lus10041265.g ID=Lus10041265.BGIv1.0 annot-version=v1.0 ATGGAGATGGTCTCTCTATCGACTTACCGACGGCTCCCACTAAACATCCCCATTTCATGTATCAAGGTCGTCCATCATCCTGTAAAGAACAGGAAGCATG CACATCTCTTCTCCTACTCGCTTGTTTCTCTGTCGATTCCATCTCTCCCCTCATCATCAAGGACACTAACTGGAGCAGCATATAATCCATCCATCACCAG AACTAGCAGCCACCATTTGTTGGCCGTCATGGATAGAACTTGCCACAATCCACAATTCATTAAAGAGATAGTTAGAGTGAGGATTTATGTTGCAGATTCG TCATGGAACCTTGAGGACAGTTTATGTATGAGAAAGTTAATACTTTGGATATCTGCTCTCTCTGTTCAACAAGTATCATTCTTGATACCTGCACAAGCAG CAAATGCAAGTGGAAGTATCGGACCAGGTGCTCTATATGATGTCGGCGAGTTATTCGAACTGGGAATCCAGCTCTCTTATCTGTTATTGCTGCTGGCACT GCTTGGTGTTGGAACGTTCTTTGTGATTCGCCAGGTTCTCGTTCGTAGAGAACTTGATCTTTCTGCTAAGGAACTACAGGCATGTTCTTCCTTACTTAAT GAGTTATTTTTTCCCCTTCCCTCTGCATTCATACTCTATGCTGAATATGCCTTTGCCAAATTGAAGGAGCAAGTAAGGAGTGGAGATGCAAGTGCCACAG AGTTGTTTGAACTTGGAGCTGTGATGCTGAGGAGGAAGTTCTATCCTGCTGCCACCAAATATTTGCTTCAAGCAATTGAGAAATGGGATGGTGATGATCA GGATCTAGCACAGGTGTACAATGCACTTGGGGTGAGTTATATCCGAGACGGAAAGACAGATAAAGGTGTAGCTATGCTTGAGAAGGCAGTGAAGCTTCAG CCTGGGTATGTAACTGCATGGAACAACCTGGGAGATGCTTATGAGAAGAAGAATGACATGAAAGGAGCCCTCAAGGCATTCGAGGAAGCACTGTTGTTCG ATCCCAATAATAAGGTGGCGCGGCCGCGTAGAGATGGACTTAGGGATCGTGTGCAGATGTACAAAGGCGTGCCTGTGAAATCAAAGGATAAAGGAGTACC AGTAAAATCAAAGGATCGATGA
AA sequence Show only first row Show all	>Lus10041265 pacid=23179839 polypeptide=Lus10041265 locus=Lus10041265.g ID=Lus10041265.BGIv1.0 annot-version=v1.0 MEMVSLSTYRRLPLNIPISCIKVVHHPVKNRKHAHLFSYSLVSLSIPSLPSSSRTLTGAAYNPSITRTSSHHLLAVMDRTCHNPQFIKEIVRVRIYVADS SWNLEDSLCMRKLILWISALSVQQVSFLIPAQAANASGSIGPGALYDVGELFELGIQLSYLLLLLALLGVGTFFVIRQVLVRRELDLSAKELQACSSLLN ELFFPLPSAFILYAEYAFAKLKEQVRSGDASATELFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYIRDGKTDKGVAMLEKAVKLQ PGYVTAWNNLGDAYEKKNDMKGALKAFEEALLFDPNNKVARPRRDGLRDRVQMYKGVPVKSKDKGVPVKSKDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	0	1
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033026 [exp]	1.7	0.9319
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	1.7	0.9426
AT1G56180			unknown protein		Lus10006532 [exp]	2.0	0.9340
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10002676 [exp]	3.2	0.9279
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	6.3	0.9303
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	7.1	0.9069
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	7.7	0.9154
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	9.2	0.9144
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	10.1	0.9211
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	10.9	0.9180

Compare expression of checked genes

Lus10041265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.