Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 84 / 2e-17 disease resistance family protein / LRR family protein (.1) AT4G04220 61 / 9e-10 AtRLP46 receptor like protein 46 (.1) AT5G49290 59 / 4e-09 ATRLP56 receptor like protein 56 (.1) AT3G12610 57 / 1e-08 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT4G20140 56 / 3e-08 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G02130 56 / 3e-08 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT3G51740 55 / 5e-08 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G74190 55 / 6e-08 AtRLP15 receptor like protein 15 (.1) AT3G47110 54 / 1e-07 Leucine-rich repeat protein kinase family protein (.1) AT3G49670 53 / 3e-07 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021973 [exp] 228 / 3e-69 AT2G34930 313 / 2e-95 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 146 / 2e-38 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10029483 [exp] 142 / 4e-37 AT2G34930 484 / 1e-155 disease resistance family protein / LRR family protein (.1) Lus10024737 [exp] 114 / 2e-27 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 105 / 1e-24 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 102 / 2e-23 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 101 / 4e-23 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 99 / 2e-22 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 97 / 1e-21 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 278 / 3e-85 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 131 / 3e-33 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 130 / 7e-33 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 112 / 7e-27 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 110 / 3e-26 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 110 / 4e-26 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 107 / 3e-25 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 106 / 7e-25 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 104 / 4e-24 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 101 / 5e-23 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10041266 pacid=23180029 polypeptide=Lus10041266 locus=Lus10041266.g ID=Lus10041266.BGIv1.0 annot-version=v1.0 ATGAACGGTGCGGATCTTTCCATTTCAGGATCAGACTTGATTGGAACATTAACCATGCTTCCAGGTTTGACTCAAGTTCATCTTTCAAGTTGTGGCCTTG TAACTGGTTCTTCAAGTTTAGCTCTTGGCATGGTGAACTTCACTTCACTTTCTGTATTGGACCTTAGTTTCAACGATCTTAATACCAGGTTCCCCAGCTG GCTTCTGAATCTGACTAGCTTGTCTCATCTTGATCTTAGCAATTCTGGATTGTTTGGGAGGATCCTTGTTGGTCTCAGTGAGCTACCAGAACTTCAGTTC TTGAACCTTGCAATGAACTATAATCTCTCAGCAAGCTGCTCTCAGTTGTTCCAAGGAAGTTGGGGAAACATCCAAGTTGTCAACTTTGCCAGCAATAAGT TGCATGGTAGTTTGCCTGAAACATTAGAGGAAAATTCTTGTGGCTCAAATGGTCTTTTACCTAACTTGCTGCAACTGAGACTAAGCAGCAACCGTTTAGT TGGGAAGTTGCCAGATTGGCTGGGGAAGCTTGGAAGTATTGTAGAGTTGAGTCTGGACAACAACTTGTTACAAGGTCAAATTCCTGCTTCTTTAGGCAAC TTACAGAACTTGACGAACCTCGGGCTCGGATACAATCAACTTAATGGAACTCTTCCTGATACCTTTGGGAAACTATCTCAACTGGAGATTTTAGATCTTT CTTCTAATCACTTGACAGGTTCCATCTCCGAATCACATTTCGTGACGCTCGCAAAGCTCAAGATCCTGTTTTTATCATCCAATTCACTCGGTTTTAACGT CAGTTCAAGTTGGGTACCGCGATTCCAGGCTCGAAATCTCGATCTTGGTTCATGCCAGTTAGGCTCTTCATTTCCAAACTGGCTTCGAACTCAGAAACAA GTCAAGTTCCTGGATTTCTCAAACGCTAGCATATCAGATACCATACCAACCTGGCTGTGGGACATTTCCTCCAACCTCTCATTGTTAAATGTTTCTTTCA ATCAGCTTAGGGGCCAACTCCCGAGCCATCTGAAGATTGCTCTTTCGCAGATGTCGATTTCAGCTCCAACCTCCTGGATGGTCCAATGCCACTTCCCAGC GAGGGGATAG
AA sequence Show only first row Show all	>Lus10041266 pacid=23180029 polypeptide=Lus10041266 locus=Lus10041266.g ID=Lus10041266.BGIv1.0 annot-version=v1.0 MNGADLSISGSDLIGTLTMLPGLTQVHLSSCGLVTGSSSLALGMVNFTSLSVLDLSFNDLNTRFPSWLLNLTSLSHLDLSNSGLFGRILVGLSELPELQF LNLAMNYNLSASCSQLFQGSWGNIQVVNFASNKLHGSLPETLEENSCGSNGLLPNLLQLRLSSNRLVGKLPDWLGKLGSIVELSLDNNLLQGQIPASLGN LQNLTNLGLGYNQLNGTLPDTFGKLSQLEILDLSSNHLTGSISESHFVTLAKLKILFLSSNSLGFNVSSSWVPRFQARNLDLGSCQLGSSFPNWLRTQKQ VKFLDFSNASISDTIPTWLWDISSNLSLLNVSFNQLRGQLPSHLKIALSQMSISAPTSWMVQCHFPARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10041266 [exp]	0	1
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10030744 [exp]	5.3	0.7010
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	8.5	0.6747
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	19.0	0.6500
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	23.2	0.6416
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	29.7	0.6474
AT1G54730			Major facilitator superfamily ...		Lus10029962 [exp]	33.7	0.6314
AT1G06750			P-loop containing nucleoside t...		Lus10021225 [exp]	54.1	0.6286
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	56.6	0.6054
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	58.9	0.5968
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	83.7	0.6182

Compare expression of checked genes

Lus10041266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.