Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021974 [exp] 89 / 1e-21 AT2G33460 51 / 4e-08 ROP-interactive CRIB motif-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147000 [exp] 68 / 5e-14 AT5G16490 76 / 8e-18 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.002G233400 [exp] 68 / 9e-14 AT5G16490 89 / 1e-22 ROP-interactive CRIB motif-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041267 pacid=23179531 polypeptide=Lus10041267 locus=Lus10041267.g ID=Lus10041267.BGIv1.0 annot-version=v1.0 ATGACCCAATCACCATCATCGTCTTCTTCTGGGAAGGTCGTCGAAAGATTTGTATTTCTTCCATTCTCCATCATCGGCGGCGGCGGCTGTAATTCTCACT CAAGCATCCAAGTCGACCACAATGCTTCCGGTCATGACGAGCAACGACGACGGCCACTTCCCACCAAATCACAACCCAAGCGCCGTCGTCCACTAACAAA GAAGATAACGGGAAGAGACGAAGAAGATGAATTAGCGGCGGGAAGGGGAAGGAGGGGCGGGTGGTCGTCTGCGGCGGCGTGGTGTGGTACGGAGAATAAG ATTTGGAGGAGTAGCAACAACGACAAGGGTGGTCGGCCGTCCGACAACAAGAACAATAAGTCCAATGGCGACGGCGGCGGATCAGACAACAAGCTGGTGA CGACCATCAAAACATCCTTGTCTCAACTCTTTGTTAATTACAAGCGAAGTGGAGATGAGGAGGAAGAAGAGGAAAAGGAGATGGAGATTGGATTCCCAAC GGATGTAAAACATGTAACACACATAGGCTTGGATGGCACCACTACCACTACTAGCAAGGGCCTTGATGCTGATGCTGATGATGGTTTGATGCTGGACAAG CTAAAAAATGCTAGTACTACTCCAGCTGAACAGATCATATCTTTTCCAACCATATCTCGAAAGCAGTTCGAGCTCGCCATGGCTGCTCAAGACCATGGCC GCAACACCTTCAACCAGCTTGCCTAA
AA sequence Show only first row Show all	>Lus10041267 pacid=23179531 polypeptide=Lus10041267 locus=Lus10041267.g ID=Lus10041267.BGIv1.0 annot-version=v1.0 MTQSPSSSSSGKVVERFVFLPFSIIGGGGCNSHSSIQVDHNASGHDEQRRRPLPTKSQPKRRRPLTKKITGRDEEDELAAGRGRRGGWSSAAAWCGTENK IWRSSNNDKGGRPSDNKNNKSNGDGGGSDNKLVTTIKTSLSQLFVNYKRSGDEEEEEEKEMEIGFPTDVKHVTHIGLDGTTTTTSKGLDADADDGLMLDK LKNASTTPAEQIISFPTISRKQFELAMAAQDHGRNTFNQLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	0	1
AT3G51710			D-mannose binding lectin prote...		Lus10025258 [exp]	2.2	0.9480
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	2.8	0.9622
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	5.8	0.9546
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	6.5	0.9252
AT1G31130			unknown protein		Lus10028643 [exp]	7.4	0.9446
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029452 [exp]	7.5	0.9398
AT1G35830			VQ motif-containing protein (....		Lus10006941 [exp]	8.5	0.9445
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	8.7	0.9422
AT2G44260			Plant protein of unknown funct...		Lus10033542 [exp]	10.0	0.9229
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	10.7	0.9258

Compare expression of checked genes

Lus10041267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.