Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55680 605 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G13340 605 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G56190 603 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G78070 487 / 1e-170 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 459 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 55 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 52 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 52 / 9e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 51 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 49 / 5e-06 MAC3B MOS4-associated complex 3B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021975 [exp] 907 / 0 AT5G56190 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037252 [exp] 615 / 0 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035667 [exp] 614 / 0 AT1G55680 684 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041102 [exp] 486 / 2e-170 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036428 [exp] 462 / 2e-160 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 58 / 7e-09 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 55 / 7e-08 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10011224 [exp] 55 / 1e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 55 / 1e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147400 [exp] 761 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G233700 [exp] 741 / 0 AT3G13340 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G168600 [exp] 629 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G471800 [exp] 622 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G000500 [exp] 620 / 0 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G094100 [exp] 498 / 5e-175 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G168600 [exp] 497 / 1e-174 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G147500 [exp] 187 / 4e-58 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G000800 [exp] 182 / 7e-56 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G045500 [exp] 57 / 2e-08 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10041268 pacid=23179748 polypeptide=Lus10041268 locus=Lus10041268.g ID=Lus10041268.BGIv1.0 annot-version=v1.0 ATGGCAGAAGAGGCTGAGATGGCTGATTTCGTTGATGAAATTGATGAAGACAACTATGGTGGTGCAGCAGCTGGAGGAGGGCATGATGTTGAAATGGTAG CGGATGAATATGACATGCTTACCAAGGTGACTGATACATCTTCTGCCCAAGCCAGGATGGGAAAAGATATACAGGGTATTCCATGGGAAAGATTGAATAT AACCAGAGAGAAGTATCGATTGACACGGCTTGAACAGTATAAGAACTACGAAAATATCCCTTTGTCTGGAGAATTCGTCGACAAGGCATGCAAACCAACA GAAAAGGGTGCCAACTTCTTTGAGTTCTTCTACAATACTAGATTGGTCAAGCCCACAATTCTTCATTTTCAGCTGAGGAACTTGGTTTGGGCTAGTTCAA AACATGATGTGTATCTGATGTCTAACTACTCTGTCATGCACTGGTCGTCACTATCTTGCAACTTATCTGAGGTCATCAATTTTGCTGGACATATAGCACC TGATGAGTTGCTAAGGGGTGATTGTTTGGTAATACAGAAACATTCAGGAAGTTTGCTGGAAGGTTTCACTCAAACTCAAATAAGCACCCTGGCAGTCAAA GATAATTTCTTGGTAGCAGGCGGATTCCAAGGAGAGCTTACGTGCAAGCGCTTAGATAAACCAGGAGTTAGCTTTTGCACCCGCACTACCCATGACGATA ATGCCATCACAAACTCCATTGAAATATATGATGGCTTAAGCGGAGGAGTCCATTTCATGGCAGCCAACAATGATTGTGGTCTGAGAGAATATGACATGGA GAAATTTCAGCTCCTGAATCATTTTCGGTTCCCATGGCCAGTGAATCATACATCAATTAGTCCTGACAGAAGTCTGGTAACTGTTGTTGGAGATAACCTG GATGGACTGCTGGTCGATTCGCAAAATGGAAAGACGGTATCCAAAATGGCAGGCCATCTAGATTATTCATTTGCCTCCGCATGGCACCCAAACGGGCTTG TGTTTGCAACAGGGAACCAGGATAAGACCTGCCGGGTGTGGGACATAAGGAATTTGTCATCCCCCACAGCAACTCTGAAGGGAAACTTAGGTGCAGTGAG ATCGATTCGGTTTTCGTCAGATGGCGAGTACATGGTGGTGGCCGAGCCTGCAGATTTTGTGCATGTATACAGCACAAAGCTAAACTACCAGAGAAGGCAA GAGGTGGACTTCTTTGGCGAGATATCGGGAGTAGCGCTTAGCCCGGACGATGAGTCGTTATACATAGGAATATGGGACCGCACATACGCTAGTTTGCTGC AGTATAACAGACGGCATAGCTACGGGTATCTGGATTCGTTCTTGTAA
AA sequence Show only first row Show all	>Lus10041268 pacid=23179748 polypeptide=Lus10041268 locus=Lus10041268.g ID=Lus10041268.BGIv1.0 annot-version=v1.0 MAEEAEMADFVDEIDEDNYGGAAAGGGHDVEMVADEYDMLTKVTDTSSAQARMGKDIQGIPWERLNITREKYRLTRLEQYKNYENIPLSGEFVDKACKPT EKGANFFEFFYNTRLVKPTILHFQLRNLVWASSKHDVYLMSNYSVMHWSSLSCNLSEVINFAGHIAPDELLRGDCLVIQKHSGSLLEGFTQTQISTLAVK DNFLVAGGFQGELTCKRLDKPGVSFCTRTTHDDNAITNSIEIYDGLSGGVHFMAANNDCGLREYDMEKFQLLNHFRFPWPVNHTSISPDRSLVTVVGDNL DGLLVDSQNGKTVSKMAGHLDYSFASAWHPNGLVFATGNQDKTCRVWDIRNLSSPTATLKGNLGAVRSIRFSSDGEYMVVAEPADFVHVYSTKLNYQRRQ EVDFFGEISGVALSPDDESLYIGIWDRTYASLLQYNRRHSYGYLDSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	0	1
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	1.0	0.8682
AT1G56220			Dormancy/auxin associated fami...		Lus10015193 [exp]	2.8	0.8086
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10015064 [exp]	3.5	0.8279
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	3.7	0.8294
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	5.5	0.8137
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	5.7	0.8230
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	5.9	0.8188
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	6.7	0.8063
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	13.3	0.7969
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10002950 [exp]	13.5	0.7819

Compare expression of checked genes

Lus10041268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.