Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48360 860 / 0 zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037442 [exp] 137 / 2e-37 AT1G48360 99 / 7e-25 zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G233800 [exp] 1070 / 0 AT1G48360 964 / 0.0 zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF08774 [flax] [poplar] VRR_NUC VRR-NUC domain CL0236 [flax] [poplar] PF08797 [flax] [poplar] HIRAN HIRAN domain
Representative CDS sequence Show only first row Show all	>Lus10041269 pacid=23179707 polypeptide=Lus10041269 locus=Lus10041269.g ID=Lus10041269.BGIv1.0 annot-version=v1.0 ATGTTGACCGGGCGGGAGAGCTTGATCCGACTGGTCGGAAAGCGCCGGCGATTCCTCCCTAATCGTCATTCCCTGCTTTCCACCCCTCCCCAGGACCGAG ATGACGGGGATGTCTCACCTGTGGATATAATGGAGGACTTGAAAGCCAGGGAAAATGATAAATCTTCCAGTGGAAGAAGTCCAGTTGCTGAATGGGTTAG TTGCCCTGTTTGTGGAAGTAAAGTTCGCGGGGAAGACTACATGATCAACTCACACCTTGGTATTGCTTCGCGAATTATTGCTGAAGAAGTCTATGCTTTT CATCCTTATACGTCGTATATCATTTCCCGCTCTTCTGGACTATTGTTCACAATCATTTCATACTTGTTTGTAGATGTATGTCTATCGAAAGGGAAGAAAA GGAAGTTGACCCAGCGCACACTGCTGCAGTTGGATTTTGGACGGAAGTCAAGTTCCTCAATTGAATCTAGCGAGTCAGATAAGTTAGGAAGCAATGCAGT TTATTCGGGATCTTTAAACAGCAGACTTTCAAAGAAGGCGGTGGTTTGTTTGCAGAACTCAAATACAGACGTGGAAAAGGATATTGATCGTGGAGAATCA GTTTCAGTAGCGAACCCTCCTAGTGTTGTTGTTAGCCAGGCTATTGAAGAAATTTATGACAGTGATGATAGATCGCACCTAGTTGATTTTCCTTCTGCAA CCATCGCCAACAGAATTGACAGTAGTGCTGAAGCTGTTACTAGAGATTATACATCTGGGATGGCTCTTGATACTTATATTGTTGGTCGCAAGTTTAGTAT TGAAAAGGATCTAAATCATGGAGCTAGCATCTCTCTTTTGAGAGACCCAGAAAATGTGAAGGATCCTTGCGCTATAAAGGTTCTTTTAGGAGATTCTTCA TCTTTCAGGGTGCTTGGTTTTTTACCACGAGAGTTGGCTTGTTGTTTGTCTCCTTTGATTGAGAAGCACAATCTCATTTTTGAGGGGTTCATTACTGCTG TTCCGAAAAATCCTCTTGATATCGTTCCGGTTCAAATAATGTGCAATGATGTCCCAACAAGCAGTAGTACTGACTGTATCAAGGACTTCACTTCTTCTTG GAATAATGTTATTGATGTGGTTGAATCTATGAAGAGTAGCTCACCCAGTGTGGCAAATGTGTGGTCTCAACTTCTTACAGAGTTGTTTTTATCTCTCTCG GATGACAGTCAGAGGCTTTTTCTTCGGCTATACTTACGGAAAGGACCTTGGTTCCGCATGTCCAGCATTTCTTATCCTGAAATTGTGAATCTTGAGGATG CAAGCAGCGAGCTTTCTGCCAAAGGTTATATGTGTTCCATTGGGCACATAAATGAACTTAAAGACAACAGCATCGAGGAGATTCTCAGTTTGCTAACGGT CTCTGAGCTACGAGATATTAGTGGCATGCTTACAAAGAACGGTCCTCTCAGTACAAGGAAGCAGGATCTTGTAGCAGAGCTTGTCTCGTTAGGCAAAGAT GGATTATGCCCAAGCCTGCCAAGATCAATTCTGGAGAAGACTGGAACTTGCGTCAAAATAACTGCAAAAGCTGAGTCCCTTATCTGGCGCGCTGAGAGAC TTTTCTTTGTGAACGGGGAGCAGGATCTCAGAGCATTTCTACTGGTAGATTTGGGAGTAGTCAAGTATCCTAGTTACAAGTGCATAGTATCTCAACAAAT ATTTTCAGGTCGACATGAGCTACTCGCTTATGAGGAAGCAATTGAAGTAGGGCAAATCATGGATGAATCACTTGATGAAAGTAACAATGAGACGGTGTTA AGATGCATAGAAATAGCTCAGTCACGTCTATCAAGCTCCAGCACAAATGATCTGGCCATATCCTCTGAGACAGAGGCTATATACTTTTCTTGTTTTACAG CATCATGGGTGTACTCGAAGGTTGCCACTCTTGGTGTTTCGTTTCTTGAGAGCAACCGCAGGTACAACGAAGCAATTGCTTTACTGAAGCTGTTGCTTAG TTGTTTTGCTTGTGATGGAAGAAGAGGATATTGGACTTTGAGACTGTCTATCGACTTAGAGCACATTAGCTGTCCCAACGAAAGCTTAACAACTGCCGAG AATGGGTTACTGGATTCATGGGTACGTGCAGGTTCAAAAATGGCTTTGCAAAGGCGAGTTATTCGTCTGGCAAAACCACCAAGGCGCTGGAAACCTCCTA GTTTTGCTGATTCCTTGAAGAGAAAGATTAAGGAGGCAAGTAGCTGTCTGTTAAATGTCCAAATTCAAGGAAGACCTTTGAATAGCGAAACTGGGGCGAA GAGTAGGTACTACGGAGAAGATGGTGATCAGTGTGGAGTTGAGCAACTTGCTTTGCAGTACTACGCTGGAGAAGACGGCGGATGGCAAGGTGTTCATACT GAAAGCGGTATTTGGTTGACGATTTTCAGTCTTCTTATGTGGGATGTGATATTCTCCGACATACGGAATGTATTCTACAACAAATTTCAGACTGCTCCTC TGGATTTTGGAAACGAGGGGTTCTATATAGCCAGAAAGAGCGCAATAGAATCTCAGCTGCTGAAAATACGTGATGGCATGGCCGAGGAGATCCTCATAAC GTCGTGGGAGCTGTATTCAGGAACTGCTTGCAGAGGAGTGAATTGGGAGAGGCATTCTCTCTCCGAACTTCGAGCTGTAGTGACTTGCACAGGCGGACCT TGTTTGGCTTCACTGTGCCGAGTTCTAGCTGAAGATTACCGGAGCTGGAGCAGTGGGATGCCGGATTTACTGCTGTGGAGGTTCCATGAAGAGTACTACA GTGGTGAAGTGAAGCTTGTTGAGGTGAAAGGGCCTAGAGACACTCTGTCCGAGCAGCAGCGCGCTTGGCTGCTGATGCTGATGGACTTGGGATTCAATGC AGAAGTTTGCAAAGTTAGCCCCATGCCATTGTGCACGTAA
AA sequence Show only first row Show all	>Lus10041269 pacid=23179707 polypeptide=Lus10041269 locus=Lus10041269.g ID=Lus10041269.BGIv1.0 annot-version=v1.0 MLTGRESLIRLVGKRRRFLPNRHSLLSTPPQDRDDGDVSPVDIMEDLKARENDKSSSGRSPVAEWVSCPVCGSKVRGEDYMINSHLGIASRIIAEEVYAF HPYTSYIISRSSGLLFTIISYLFVDVCLSKGKKRKLTQRTLLQLDFGRKSSSSIESSESDKLGSNAVYSGSLNSRLSKKAVVCLQNSNTDVEKDIDRGES VSVANPPSVVVSQAIEEIYDSDDRSHLVDFPSATIANRIDSSAEAVTRDYTSGMALDTYIVGRKFSIEKDLNHGASISLLRDPENVKDPCAIKVLLGDSS SFRVLGFLPRELACCLSPLIEKHNLIFEGFITAVPKNPLDIVPVQIMCNDVPTSSSTDCIKDFTSSWNNVIDVVESMKSSSPSVANVWSQLLTELFLSLS DDSQRLFLRLYLRKGPWFRMSSISYPEIVNLEDASSELSAKGYMCSIGHINELKDNSIEEILSLLTVSELRDISGMLTKNGPLSTRKQDLVAELVSLGKD GLCPSLPRSILEKTGTCVKITAKAESLIWRAERLFFVNGEQDLRAFLLVDLGVVKYPSYKCIVSQQIFSGRHELLAYEEAIEVGQIMDESLDESNNETVL RCIEIAQSRLSSSSTNDLAISSETEAIYFSCFTASWVYSKVATLGVSFLESNRRYNEAIALLKLLLSCFACDGRRGYWTLRLSIDLEHISCPNESLTTAE NGLLDSWVRAGSKMALQRRVIRLAKPPRRWKPPSFADSLKRKIKEASSCLLNVQIQGRPLNSETGAKSRYYGEDGDQCGVEQLALQYYAGEDGGWQGVHT ESGIWLTIFSLLMWDVIFSDIRNVFYNKFQTAPLDFGNEGFYIARKSAIESQLLKIRDGMAEEILITSWELYSGTACRGVNWERHSLSELRAVVTCTGGP CLASLCRVLAEDYRSWSSGMPDLLLWRFHEEYYSGEVKLVEVKGPRDTLSEQQRAWLLMLMDLGFNAEVCKVSPMPLCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48360			zinc ion binding;nucleic acid ...		Lus10041269 [exp]	0	1
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	1.4	0.8292
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10019129 [exp]	1.7	0.7946
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10024946 [exp]	9.9	0.7777
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	11.5	0.8022
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	14.7	0.7837
AT3G20650			mRNA capping enzyme family pro...		Lus10027333 [exp]	16.4	0.7815
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10037073 [exp]	19.9	0.7690
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	20.8	0.7559
AT3G63240			DNAse I-like superfamily prote...		Lus10042619 [exp]	27.6	0.7351
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	28.0	0.7648

Compare expression of checked genes

Lus10041269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.