Plant FIBer expression Database

Lus10041270 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10800 65 / 3e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037441
[exp]
298 / 1e-102 AT1G10800 119 / 3e-34 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G147600
[exp]
92 / 3e-22 AT1G10800 73 / 2e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10041270 pacid=23179780 polypeptide=Lus10041270 locus=Lus10041270.g ID=Lus10041270.BGIv1.0 annot-version=v1.0
ATGAACTCATCTATACCAGTAACCTCCACAGCCATCAACAACACCAGTACCACCATTGATTCCACACAACTCTCAATCCAAAACCTTCTCAAGCATTGGA
ACACAAGGCAGAAATACTGGACTCCATTCTTCAGATCACCTGACCAGGTGGCGTACCAGCTGCAACATCCGAACACACCTCCATGGCGAACCAAACTAGC
AACCTTCCTCGAAACCACGCCCCTCCGAATCGCAGTCATCGTTCTCCTCCTTCTCGACCTCTTCCTCACGACCCTCGACCTCTCCTCCTCCATACTAACA
CCATGCCATCCAATGAAACCATTAGCCGCTGAATGGTTCCACTGGGTGGAGATTGGGATCCTGAGCCTGCTCTGTGCCAAGCTAGTGGCTCTACTCGTGG
CGATTGGCCCCACGTTGTTCTTTGGCAGGCCAGGGTATGTCATCGATGGTGTGGTGGTGGTGGGAGCTTTGGTCCTGGAAGGGCTCTTGGAAGGGAGAGG
AGGAGGTTTGGTGGTGGTGGTCAGCTTGTGGAGAGTGGTGAGGGTGGTCGAGAGCGCCTTCGAGCTGAGCGATGAGGCGATCGAGGCGATGATCGAAGGG
ATAGTGCTCGAGTTTGAGGCTCTCCGAGCAGAGAACGCCATGTTGTTGGAGACCATAGCTGACAGAGATAGGACCATCAGGATGCTGCAAGAAATGGTAG
ACAAGTTGCAAACTGTAGAGAATCGTTACATCCCAATAACTCGAGATTCAATCTGA
AA sequence
>Lus10041270 pacid=23179780 polypeptide=Lus10041270 locus=Lus10041270.g ID=Lus10041270.BGIv1.0 annot-version=v1.0
MNSSIPVTSTAINNTSTTIDSTQLSIQNLLKHWNTRQKYWTPFFRSPDQVAYQLQHPNTPPWRTKLATFLETTPLRIAVIVLLLLDLFLTTLDLSSSILT
PCHPMKPLAAEWFHWVEIGILSLLCAKLVALLVAIGPTLFFGRPGYVIDGVVVVGALVLEGLLEGRGGGLVVVVSLWRVVRVVESAFELSDEAIEAMIEG
IVLEFEALRAENAMLLETIADRDRTIRMLQEMVDKLQTVENRYIPITRDSI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10800 unknown protein Lus10041270
[exp]
0 1
AT4G25850 ORP4B OSBP(oxysterol binding protein... Lus10006969
[exp]
1.7 0.9879
AT1G10460 GLP7 germin-like protein 7 (.1) Lus10010726
[exp]
2.0 0.9899
AT4G18425 Protein of unknown function (D... Lus10013969
[exp]
3.2 0.9888
AT1G10460 GLP7 germin-like protein 7 (.1) Lus10029214
[exp]
5.9 0.9868
AT1G20850 XCP2 xylem cysteine peptidase 2 (.1... Lus10013204
[exp]
6.0 0.9875
AT5G61750 RmlC-like cupins superfamily p... Lus10042616
[exp]
7.0 0.9835
AT3G16210 F-box family protein (.1) Lus10015408
[exp]
7.0 0.9429
AT4G18425 Protein of unknown function (D... Lus10015394
[exp]
7.9 0.9523
AT3G62160 HXXXD-type acyl-transferase fa... Lus10004527
[exp]
8.5 0.9849
AT4G35350 XCP1 xylem cysteine peptidase 1 (.1... Lus10030722
[exp]
9.8 0.9830

Lus10041270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.