Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15550 619 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 88 / 1e-18 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 82 / 1e-16 WD-40 repeat family protein / notchless protein, putative (.1) AT5G64730 79 / 4e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 77 / 5e-15 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT3G18130 73 / 3e-14 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 72 / 7e-14 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G79990 69 / 3e-12 structural molecules (.1.2.3.4.5) AT1G18080 67 / 5e-12 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 67 / 1e-11 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037439 [exp] 822 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024727 [exp] 802 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032344 [exp] 785 / 0 AT5G15550 639 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 96 / 4e-21 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 91 / 3e-19 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 78 / 3e-15 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10033710 [exp] 77 / 1e-14 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10029493 [exp] 76 / 1e-14 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10012230 [exp] 74 / 3e-14 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093300 [exp] 671 / 0 AT5G15550 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 84 / 2e-17 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 80 / 6e-16 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.019G087200 [exp] 71 / 5e-13 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.013G079600 [exp] 69 / 2e-12 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.012G052700 [exp] 69 / 2e-12 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 67 / 3e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G212800 [exp] 67 / 4e-12 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G096900 [exp] 67 / 5e-12 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G056300 [exp] 68 / 6e-12 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0072 [flax] [poplar] Ubiquitin PF08154 [flax] [poplar] NLE NLE (NUC135) domain
Representative CDS sequence Show only first row Show all	>Lus10041271 pacid=23179702 polypeptide=Lus10041271 locus=Lus10041271.g ID=Lus10041271.BGIv1.0 annot-version=v1.0 ATGGAAGCTGACATGGAAGAACGGCAGATTCAAGTTCGATTCGTCACAAAGCTGAAGCCCCCCTTCAAAGCTCCGCCCACTGGCATTACCATCCCTGCTA CTATTACCCGTCTCGGCCTCTCCTCTATTGTCAACAGCCTCCTCCAAGCTGGTGATCCTGAATGGGAGTCTCAACCCTTTGATTTTCTGATCGACGGAGA GCTGGTTCGAATGGCCCTCGACCAGTTTCTCCTAGCTAAGGGAATTTCAGCTGAGAGAACATTGGAAATTGAATATATAAAGGCAGTGGTTCCGAGGAAA GAGGAAGATCCTTCATTGCATGATGATTGGGTCAGTGCAGTTGATGGTTCTTGTTCTAGGTTCATCTTGACTGGATGCTATGATGGTTTTGGAAGGGTTT GGAAAGCTGCCGGAGTATGTACTCATATACTTGAGGGTCACACTGATGTAGTTACCTCTGTCACTGTCATTAACCCTGAAGGGAATGCAACTCTTGCTAC TGCATCAAAAGATCACACTGTTAGGCTGTGGAAGATGGATTCAGAAGAACCTAAGAAATCTCTGGCCAAGATTAGGCCATTCAAGATTTTGCGTGGTCAC AATGCTTCTGTGCAGAGTGTTGCAGCCCAAACATCTGGAAACATGATTTGTTCCGGTTCTTGGGATTCTACAATCAACTTGTGGCAGACGAATGACTCTG CTGCAGAAGATAACTCGGTCTCGATCAAGAAGAGGAAAACAAAAAACGATACTCAAGATTCTCAATTGGAGGGTGCAGCAGTCTCTACGTTGGTGGGTCA TACACAACGTGTATCTGCAGTTGTATGGCCAGAAGCTGATACAATCTACTCAGCATCCTGGGATCATTCCGTTAGAACATGGGATACTGAGACAGGCAAA GACGTGTTGAGCATATTCTGTGGAAAAGCCCTGAATTGCCTTCATATAGGAGGTGAAGGGTCTGCCCTTGTGGCTGCAGGAGGATCAGATCCTGTACTAA GGATATGGGATCCGCGAAAACCAGGAACTTCTGCTCCTGTGTATCAGTTTTCATCCCATACTTCATGGATTTCGGCATGCAAGTGGCACACGAAATCTCC GTTCCACTTGCTTTCTGCATCTTACGATGGGAAAGTCATGCTGTGGGATCTGAGAACTGCGTGGCCGGTTTCTAAAGTCGAGTCCCATGAAGACAAGGTG TTATGTGCGGATTGGTGGAAAGGGGAAAGCGTAGCCAGTGGCGGGGTTGATTCGAAGCTTCGAATACATTCTGGAATTTCTGTGGTTTGA
AA sequence Show only first row Show all	>Lus10041271 pacid=23179702 polypeptide=Lus10041271 locus=Lus10041271.g ID=Lus10041271.BGIv1.0 annot-version=v1.0 MEADMEERQIQVRFVTKLKPPFKAPPTGITIPATITRLGLSSIVNSLLQAGDPEWESQPFDFLIDGELVRMALDQFLLAKGISAERTLEIEYIKAVVPRK EEDPSLHDDWVSAVDGSCSRFILTGCYDGFGRVWKAAGVCTHILEGHTDVVTSVTVINPEGNATLATASKDHTVRLWKMDSEEPKKSLAKIRPFKILRGH NASVQSVAAQTSGNMICSGSWDSTINLWQTNDSAAEDNSVSIKKRKTKNDTQDSQLEGAAVSTLVGHTQRVSAVVWPEADTIYSASWDHSVRTWDTETGK DVLSIFCGKALNCLHIGGEGSALVAAGGSDPVLRIWDPRKPGTSAPVYQFSSHTSWISACKWHTKSPFHLLSASYDGKVMLWDLRTAWPVSKVESHEDKV LCADWWKGESVASGGVDSKLRIHSGISVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15550			Transducin/WD40 repeat-like su...		Lus10041271 [exp]	0	1
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	7.2	0.8524
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	8.2	0.8403
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10005913 [exp]	9.0	0.7972
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	12.5	0.8269
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10032123 [exp]	19.8	0.8137
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033296 [exp]	20.5	0.7873
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	25.5	0.7878
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	27.8	0.7671
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	33.0	0.8120
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	34.3	0.7449

Compare expression of checked genes

Lus10041271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.