Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60690 571 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 570 / 0 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 565 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60680 550 / 0 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 538 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 518 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 112 / 5e-28 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 105 / 9e-26 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT5G53580 100 / 1e-23 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 94 / 2e-21 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037437 [exp] 679 / 0 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 588 / 0 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 548 / 0 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 470 / 2e-168 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 395 / 4e-138 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 380 / 6e-132 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 366 / 2e-126 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 319 / 5e-109 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 199 / 3e-64 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147700 [exp] 595 / 0 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 577 / 0 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 557 / 0 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 400 / 8e-140 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 394 / 3e-137 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 387 / 7e-135 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 376 / 2e-130 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 108 / 1e-26 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.005G207000 [exp] 107 / 2e-26 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 107 / 2e-26 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10041272 pacid=23179902 polypeptide=Lus10041272 locus=Lus10041272.g ID=Lus10041272.BGIv1.0 annot-version=v1.0 ATGGTGGGTGAAGTGAGGAGGATGAAGCTAGGCTCGCAAGGTCTGGAAGTCTCGGCACAGGGACTTGGTTGCATGGGGATGTCTGCCTTCTACGGCCCTC CTAAGCCTGATGCCGACATGATCGCCCTCATCCATCACGCCATCGACTCCGGCGTTACTTTCCTCGATACCTCCGATATCTACGGTCCGAAGACCAACGA GATCCTTCTCGGCAAGGCTTTGAAGGGTGGGGTTCGTGAGAAAGTTGAGCTGGCTACGAAATTTGGAATCAGCTATGAGGAAGGGAAGAGGGGGATTAAA GGGGATCCTGCTTATGTTAGGGCTGCTTGTGAAGCTAGCTTGAAGAGGCTTGAAATTGACTGCATTGATCTTTATTACCAGCATCGTATTGACACCACCG TCCCCATCGAAATCACGGTTGGAGAGCTGAAGAAGCTAGTAGATGAGGGTAAGATAAAGTACATTGGTCTATCAGAGGCCTCTGCTGCAACAATCCGAAG AGCTCATGCTGTTCATCCAATAACAGCTGTGCAGTTGGAGTGGTCATTGTGGTCAAGAGATGTGGAGGAAGAGATCATCCCAACGTGCAGGGAACTTGGG ATTGGGATTGTTGCCTACAGTCCCCTTGGCCGTGGGTTCTTTGCTTCCGGGCCTAAGCTTATTGAAAACTTTGCCGAAGGCGACTTCCGAAAGATGCAAC CGAGGTTCCAAGGTGAAAATCTGGAACACAACAAGACCCTATTCGAGAGGGTTAATGAGATTGCAAGCAGAAAGGGTTGCACACCGTCGCAACTGGCACT TGCTTGGGTGCATCACCAGGGGGACGACGTTTGCCCCATTCCAGGAACCACCAAGATGGAGAACTTGAACCAGAACCTGGGAGCTCTGTCCGTGAAACTC TCCCATGAGGAGATGGCCGAACTCGAAGCCATTGCTGCGGTGAAGGGTGAAAGATACATGGAAGGCATGGCAACGTTCAAGGGAGGCGACACTCCTCCTC TGTCTTCCTGGAAAACCACTTAA
AA sequence Show only first row Show all	>Lus10041272 pacid=23179902 polypeptide=Lus10041272 locus=Lus10041272.g ID=Lus10041272.BGIv1.0 annot-version=v1.0 MVGEVRRMKLGSQGLEVSAQGLGCMGMSAFYGPPKPDADMIALIHHAIDSGVTFLDTSDIYGPKTNEILLGKALKGGVREKVELATKFGISYEEGKRGIK GDPAYVRAACEASLKRLEIDCIDLYYQHRIDTTVPIEITVGELKKLVDEGKIKYIGLSEASAATIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELG IGIVAYSPLGRGFFASGPKLIENFAEGDFRKMQPRFQGENLEHNKTLFERVNEIASRKGCTPSQLALAWVHHQGDDVCPIPGTTKMENLNQNLGALSVKL SHEEMAELEAIAAVKGERYMEGMATFKGGDTPPLSSWKTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	0	1
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	1.0	0.9253
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	2.4	0.8926
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	2.8	0.9034
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	3.7	0.8789
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	3.9	0.8550
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	5.0	0.8844
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10023292 [exp]	5.1	0.8572
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	5.7	0.8851
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	9.2	0.8509
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	9.5	0.8806

Compare expression of checked genes

Lus10041272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.