Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64420 743 / 0 DNA polymerase V family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025659 [exp] 1339 / 0 AT5G64420 1206 / 0.0 DNA polymerase V family (.1) Lus10037435 [exp] 1251 / 0 AT5G64420 831 / 0.0 DNA polymerase V family (.1) Lus10018176 [exp] 478 / 9e-151 AT5G64420 351 / 3e-104 DNA polymerase V family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285600 [exp] 927 / 0 AT5G64420 952 / 0.0 DNA polymerase V family (.1) Potri.009G079900 [exp] 927 / 0 AT5G64420 958 / 0.0 DNA polymerase V family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04931 [flax] [poplar] DNA_pol_phi DNA polymerase phi
Representative CDS sequence Show only first row Show all	>Lus10041274 pacid=23180046 polypeptide=Lus10041274 locus=Lus10041274.g ID=Lus10041274.BGIv1.0 annot-version=v1.0 ATGGGGAGCATTAAAAGAAATTCTAATTCAGTGGAGAAAGTTGAAGAGGCGGAAGAAGGTGAAATTCAACTCGTCAATCCCATCAAGAAGAAGACGAAGA AGGATCATAAGTCCAAGGATGCTGGTAATGTGGATGCTACTGCTCGTTCTGAAACCGATTCAGTCAAACCCATGGAAAGAAAGAAACTAAGGAAAAATTT GGACAAGGTGCGTCACCGCGGCCCGGAGAAGAATGAACAAGAAAAGCCGAAACCAATGGATGTGGATTCTAAAGTTGATGAAACCAAGAGGGGACAAGTG GTAGCTTCATCTAGTACCGTGCCTGCTTTCCATATTGATGTTTTCAAGGAGTTGGCATCTGCCGATGCTTCTGTAAGAGAAGCTGGTGTTGAAAGACTAG TAACCGAGTTGCAGAAGGTTCAGAATGCTTATGAAGGCAATAAGGAGTTGTATGAAAGTGGGTTGAAATTGGAAGCTGATAAAGATGATGGCTTGAATGA TACCGCACCTTCCGTCAGATATGCTATTAGGAGACTTGTCCGTGGTGCTTCATCATCTAGGGAGGGTTATGCATTGGGGTTGTCTCTGTTGGTTTGCACG ATCTCTTCCATCAAAGTTGATTCCATGCTGAAATTAATTCTTGAGATATTAGAAGTTTCTGCATCAATGAGGGGCCAGGAAGTGAAGGATTGTCTTTTAG GTAGATTGTTTTCATACAGCGCTCTTGCTCGATCAGGAAGGCTGAATGAATTGTGTATTTCAGACCCAAACACTCCTGTTATCAAGGAGTTTGTCAGTGT TCTTCTCACTCTTGCCGCAAAAAAATCTTATTTGCCAGAGCCTGTTGTTACAGTTATCTTGGACTTGGCCGAGAAGCATGGTCTCTCTCATTTCTTCATC AGGTTTCTTGTGTTTGCTTTTACTTCAATACTTGTTTGTACGGAATATTATATGCTATACTTTAATACTTGGACTCCCTCATTTCTTCATCAGTTGCAAG TGGAGCAGATATTGAACCATGTAGTTGAAGCTCCTGGACTTTCTGAGTGGTTTCATGATGCTGTGGATGCTGGGAACCCGGATGCTTTACTTCTAGCTTT GAAACTTCGGGAGAAAGTTTCAGTTGACAGCTTAAAGTTTGGAAAAGTTCTGCCGTATCCATTCAGCCCTAGCAGCTTCTTTTCCTCTGAGCATTTGAAG TTACTTAATAACTGCTGGAAGAACTCAACTTCCTGCCAACCTCGAGTGCACAGCGTGTGGCCTGTTCTTGTAAACATGCTTTTGCCTGTATTGATTTCCG AAGCTGAGGATGTGGTGTCAGCATCTAATTCTCTGAAGAAGAACAAAAAAAGTAAGAAGTCTAGTTCGTCGGATGAAGAAATAGAAAAGAATGTCCAGAA CTTCTGTGAAGTTATCATTGAGGGTGCTCTTCTCCCTTCTTCTCATGATCGTAAGCATTTGGCGCTGGATGTTTTGCTCCTCCTCCTTCCAAGACTGCCT GCATCCTTGGTACCTGTGGTTCTCTCTGACAAACTTGTGCAAGGCCTGATGGATATTCTTTCAACAAAGGATAGCTGGCTCTATAAAGTTGCACAACATT TTATTAAAGAATTAACAGATTGGGTTGGTAATGATGATGTCAGAAGGGTTGCTGTTATTGTTGCCTTACAGAAACACAGCAATGGGAAATTTGATTCCAT AACAAAGATAAAAACAGTAAAAGCTTTGTTGGCTGAGTTCAAGACAGAATCCGGTTGCCAGTTGTTCATCCAAAATTTGGTCAACTTGTTTGTTGATGAG AGCAATGCTTCAGATGAAACTTCAGACCAAAGCCAGACAACCGATGACAATTCAGAGATGGTATCACTAGAGAATAAAGATTCTGGTGTATTGGGAAATT CTGACTCCTTGAAGAGTTGGATTGTTGAATCACTGCCAAGTATGTTGAAATTTTTGAAGTTGGATCCTGAAGAAAAATTACGTGTTCAAAAGGAAATCTT GAAATTCCTAACCGTTCAAGGTTTGTTCTCTGCATCTCTTGGCTCTGAAGTCACGTCATTTGAACTTCAAGAGAAATTTACATGGCCAAAGGCAGCAACT TCAAGTGCTATCTGCAAAATCTGCATTGAGCAAATCCAATCATTGCTGGCAAGTGCTCAAAAGATGGAGTCGTCTCCTGCTTTGCTGAATGGCTCCGAGG CTAGTGATCTTGGGTCTTTCTTCATGCAGTTCCTTTCAACATTGCGTAGCATACCGTCTGTTTCTCTATTCCGAAATTTAAATGATGAGGATGAGAAGGC ATACCAAAAGTTACTGGTAACAGAAGCTAGTCTTCACAAACAGGAAACAGAAGACATGTCTGAGAACGTTACTTACAAGTACCATGCACTGAGATACTTG ATAATCCAGTTATTGCTTCAAGTGCTCCTTCGTCCAGGAGAATTCGCTGAACCTGTGTCTGAAATCATCATATGTTGCAAAAAGGCCTACCAACTTGCTG ACATTCCTGACCAGGAAGAAGATGAGTCTGATGTGGATACTGAGTGGATGGATGTTCTTGTGGACACATTAATTTCACTACTACCACAGTCATCTGCCTC TGTACGGACCTCCATTGAGCAGGTGTTCAAATCTTTCTCCTCAGATGTGACAATGGATGGATTACTGCAGATGCTGCGCATCATCAAGAGAGACTTGAAG CCATCTAGACATCGGGAAGCAGATAGTGAAAATGATGATGATGACGATGATGATGATCTTCTTGACATAGAAGAGGACGAAGATGATGAAATTGATCAAG CCGGAACTGGTGAAACTGGTGAGAGTGAAGAACAGACTGACGACTCTGAGGCGGTCTTGGAAGATGGAGATGACAAAGAATCGCCTGAAGATTCTGATGA TGAGTCTGATGAAGGAATGGATGATGATGCCATGTTCAGGATGGACACATACCTCGCTCAGATTTTCAAAGAGAAAAAGAATCAGACTGGGAGTGAAACT GCTCAATCGCAGCTAGTCTTGTTCAAGCTCCGTGTCCTTTCATTGCTAGAGATATACCTACATTCAAATCCAGGCAAGTGGAGTCCTCACGTTTTGACAA TCTACTCATACTTGGCCAAGGCGTTCGTTAATCCACAGACTACAGAAGTGAGCGAGCAGTTAGGACAGAGAATATGGGGAATTCTGAACAAGAAAATATT GAAGGCAAAGGAGCTTCCAAAAGGAGACAATGTGAATCACTCAATGCTAGTATCGTTGCTGGAAAGAAATTTGAAGTTAGCATCAAGGCCATTCAAGAAG AAGAAATCTGCTGCTGATTCCAAGAAAAAACAGGCAGCTGCCCAGAAACGACACAAAATGATTGCCTCCCTTTCTCAAGATTCGACATTTTGGATTCTGA AGATAATTGATGCCTGCAAGTTCAGCGGGGAAGAACTCGAGAGCGTCTTTGGTTCCTTAAAGAATATGCTCACGGGGTTCTTCGATAGTAAAAAATGTCC GATAAAGTCGGGGTTTGTGAAAGAACTATTCAAGAGGAGACCGTGGATCGGGCACCAGCTGTTCGAGTTCCTTCTAGACAAATGCTGCAGCTCAAAGCTG GAGTTTCGTCGAGTCGAAGCACTTGATCTGGTTCTCGAGGTGTTGAAATCAATGGTTCCGGCTGCTGGTTCTGATGAAAGTAGCCGCAAGGCTGGAAAGA AGACACTGAAGAGCCGCGTTCAGAAGCTGAGTCAGCTGGTGAAGGAGCTGGTGACAAATATGCCAGAGAAACAGTCGAGGCATGCTGATATCCGCAAGTT CTGTGGGAAAGTATTTCAAATTATATCAGCTAAAGACTTGGCCAAGCCTTTTCTGAAAGAGTTGGATTCAGATGTCCAAGCCGCTTGTGAATTGCGCCTG GGTGAGGTTTTCCTCAACTTCAAGAAGGGGGGGAAGCAGCAATCCGTCTAA
AA sequence Show only first row Show all	>Lus10041274 pacid=23180046 polypeptide=Lus10041274 locus=Lus10041274.g ID=Lus10041274.BGIv1.0 annot-version=v1.0 MGSIKRNSNSVEKVEEAEEGEIQLVNPIKKKTKKDHKSKDAGNVDATARSETDSVKPMERKKLRKNLDKVRHRGPEKNEQEKPKPMDVDSKVDETKRGQV VASSSTVPAFHIDVFKELASADASVREAGVERLVTELQKVQNAYEGNKELYESGLKLEADKDDGLNDTAPSVRYAIRRLVRGASSSREGYALGLSLLVCT ISSIKVDSMLKLILEILEVSASMRGQEVKDCLLGRLFSYSALARSGRLNELCISDPNTPVIKEFVSVLLTLAAKKSYLPEPVVTVILDLAEKHGLSHFFI RFLVFAFTSILVCTEYYMLYFNTWTPSFLHQLQVEQILNHVVEAPGLSEWFHDAVDAGNPDALLLALKLREKVSVDSLKFGKVLPYPFSPSSFFSSEHLK LLNNCWKNSTSCQPRVHSVWPVLVNMLLPVLISEAEDVVSASNSLKKNKKSKKSSSSDEEIEKNVQNFCEVIIEGALLPSSHDRKHLALDVLLLLLPRLP ASLVPVVLSDKLVQGLMDILSTKDSWLYKVAQHFIKELTDWVGNDDVRRVAVIVALQKHSNGKFDSITKIKTVKALLAEFKTESGCQLFIQNLVNLFVDE SNASDETSDQSQTTDDNSEMVSLENKDSGVLGNSDSLKSWIVESLPSMLKFLKLDPEEKLRVQKEILKFLTVQGLFSASLGSEVTSFELQEKFTWPKAAT SSAICKICIEQIQSLLASAQKMESSPALLNGSEASDLGSFFMQFLSTLRSIPSVSLFRNLNDEDEKAYQKLLVTEASLHKQETEDMSENVTYKYHALRYL IIQLLLQVLLRPGEFAEPVSEIIICCKKAYQLADIPDQEEDESDVDTEWMDVLVDTLISLLPQSSASVRTSIEQVFKSFSSDVTMDGLLQMLRIIKRDLK PSRHREADSENDDDDDDDDLLDIEEDEDDEIDQAGTGETGESEEQTDDSEAVLEDGDDKESPEDSDDESDEGMDDDAMFRMDTYLAQIFKEKKNQTGSET AQSQLVLFKLRVLSLLEIYLHSNPGKWSPHVLTIYSYLAKAFVNPQTTEVSEQLGQRIWGILNKKILKAKELPKGDNVNHSMLVSLLERNLKLASRPFKK KKSAADSKKKQAAAQKRHKMIASLSQDSTFWILKIIDACKFSGEELESVFGSLKNMLTGFFDSKKCPIKSGFVKELFKRRPWIGHQLFEFLLDKCCSSKL EFRRVEALDLVLEVLKSMVPAAGSDESSRKAGKKTLKSRVQKLSQLVKELVTNMPEKQSRHADIRKFCGKVFQIISAKDLAKPFLKELDSDVQAACELRL GEVFLNFKKGGKQQSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	0	1
AT3G55160			unknown protein		Lus10015366 [exp]	2.0	0.9653
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	3.5	0.9557
AT5G04460			RING/U-box superfamily protein...		Lus10038390 [exp]	4.5	0.9389
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10024199 [exp]	6.0	0.9420
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	6.7	0.9469
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031839 [exp]	7.5	0.9075
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	8.9	0.9397
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	9.5	0.9397
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	9.6	0.9454
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	10.2	0.9418

Compare expression of checked genes

Lus10041274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.