Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26570 1349 / 0 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT4G24450 158 / 4e-39 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT1G10760 148 / 6e-36 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) AT5G01260 52 / 1e-06 Carbohydrate-binding-like fold (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037434 [exp] 2028 / 0 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10032829 [exp] 162 / 3e-40 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) Lus10029118 [exp] 97 / 6e-20 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10013044 [exp] 96 / 1e-19 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10004826 [exp] 55 / 3e-07 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10002495 [exp] 54 / 6e-07 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10035528 [exp] 54 / 9e-07 AT2G40070 280 / 4e-83 unknown protein Lus10027767 [exp] 50 / 1e-05 AT2G40070 288 / 5e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G234500 [exp] 1576 / 0 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 1550 / 0 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.010G044100 [exp] 163 / 1e-40 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.008G188150 [exp] 162 / 2e-40 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.016G114500 [exp] 52 / 2e-06 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 47 / 8e-05 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.006G099200 [exp] 45 / 0.0002 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain CL0179 [flax] [poplar] ATP-grasp PF01326 [flax] [poplar] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041275 pacid=23179924 polypeptide=Lus10041275 locus=Lus10041275.g ID=Lus10041275.BGIv1.0 annot-version=v1.0 ATGAAACAGCTCAAATCAAATTCAAGCCCTGGAAGAGTACAGCTCAGTATCTGTCTACGACACCAAGTACAATTTGGTGAGCATGTAGTCATGTTGGGAT CAACGAAAGAACTGGGATCGTGGAAGAAGAATGTGCCACTGAATTGGACGGAAGGTGGATGGGTATGCGATTTGGAGTTCAAAGGTGGTCAATCTGTCGA GTACAAATTTGCTGTCGTTGACAATGACAAGCGTACGGTATGGGAAGGCGGTGAGAATCGCAACTTGCAACTTCCTAAAGAGGGCAGTTATGACATGTTG TGTCAATGGAATGCTACTAGGGAGCATATTGATTTGTTGCCTACGAGTTCAGAACAGAAACAGCATAAACGAGAGAAGATAGTCCCTAATGAAGCTAGTC CTCCCACTCATCCTGATGGTGAACCAAGTCCTTTTGTTGGACAATGGCAGGGAAAGGCTGCATCATTCATGAGATCCAATGAACACGGGAACAGAGAAAG TCAAATGAAATGGGATACTTCAGGTCTTGAGGGGTTGTCTCTGAAGCTAGTCGAAAGTGATCAAGGTGCTAGGAATTGGTGGATGAAGCTTGAAGTTGTA CGGGACCTAATAGCTTCCAGTCTTGATAGTAAGGATCGTATGGATGCTCTCTGGATTAATACAGGACAAATTCAATGCTTTGAAGGCGGAGGCCATCACA GACCAAATCGCCATGCTGAGATATCTAGGCAAATATTCAGAGAGTTGGAACGAATATCCAGTAGGAAGGACACTTCCCCACAGGAAGTGCTTGTTATTCG GAAGATCCATCCGTGCTTGCCATCATTTAAGGCAGAATTTACAGCTTCAGTTCCTCTAACGCGAATAAGGGATATCGCTCATCGGAACGACATCCCTCAC GACCTTAAGCAAGAAATCAAACATACGATTCAGAACAAGCTTCATAGGAATGCTGGTCCAGAAGATCTAATTGCTACTGAGGCAATGCTTGCTCGAATTA CCAAGAATCCTGGAGAATACAATGCGGCATTTGTGGAACAATTCAAGATCTTCCATCAGGAGCTTAAAGATTTTTTCAATGCTGGAAGTCTCGCTGAACA GCTCGAATCAATTAAAGAATCCTTCGATGATAAGGGGCTTTCTGCTCTAAGATTGTTTTTGGACTGCAAAAAGATCTTGGATGCTTCTAAACAGTCGACC AGCATTGTTCAATTGATGGAGACCATTCAGTCTCTAAATGGCCTGAGAGATACAATTGGGAAAGGTCTTGAAAGTGGTCTCAGGAACGATGCTTCTGATG CTGCAATAGCTATGCGTCAAAAGTGGCGTCTGTGTGAGATTGGGCTCGAGGATTATTCTTTTGTACTATTTAGCAGATTTATAAATGAACTTGAAGCAAT GGGAGGAGCTAAGTGGCTTACTGACAATTCAGAATCAAAGTGTGTAAGCTCTTGGAATGACCCTCTTGCTTCACTAATAGTTGGTGTTCATCAACTGGCC CTATCTGGTTGGAAGCCTAAAGAATGTACAGCCATTGAAAATGAACTCCGGGCCTGGCAAGAGAGAGGTCTCTCTGAGAAAGAAGGAGATGAAGATGGCA GGATGATTTGGGCGCTGAGGCTTAAAGCTACTCTTGACAGAGCACGGAGATTAACTGAGGAATACTCGGAAGCACTTCTTCATATATTTCCGGAAAAAGT GCAGATTTTAGGCAAAGCACTTGGAGTTCCAGAAAATAGTGTGAGGACATACACTGAAGCTGAGATTAGAGCCGGGGTAGTTTTCCAGGTGTCCAAACTC TGTACACTGCTATTGAAAGCTGTCAGAAGCACTCTTGGCTCCCAGGGTTGGGATGTTCTTGTTCCAGGTGCTGCTGTTGGAACGTTAATTCAGGTTGAAA GTATTGTACCAGGTTCGTTGCCTCCAAGTGCAAAAGGACCCATAATTCTTGTAGTTAGCAAAGCTGATGGGGATGAAGAGGTCACAGCTGCTGGAAGTAA CATTGTGGGAGTTGTGCTCCTACAAGAGCTTCCTCACTTATCTCATCTCGGTGTTAGGGCCCGCCAAGAAAAAGTTACCTTCGTAACGTGTGAAGATGAA GACAGAGTTGCTGGTATAAAAATGCTTGTTGGGAAGCTTGTCAGGTACCTCGATCCAGGTGCATCTGCCAGGGGTGTGATATTGCTTGCTGATGCAGACC CACTAACTTCAGGCGCAAAAGCAGCTTCCTGTGGCCGTTTGGCTTCTTTGGCTGCAGTTTCGAGTAATGTCTCTAATGAAAAACAGGTGTCAGCTTCATT TCAAGTCCCTAAAGGTTTAGTTATCCCTTTCGGCTCGATGGAACTGGCACTGGAGCAATCTAAATCAACGGAAACATTCAAGTCACTCATAGAACAGATC GAAGGAGCAACGATGGAAGGCGGTGCACTCGACAAACTGTGCTCTCAACTCCAGGAGTTGATTTGTTCCCTGCAACCACCAAAGGACGTCTTGGATTCCG TTACCCAAGTATTTCTGGGAAACCCTTGTCTAATAGTACGGTCAAGTGCCAATGTCGAGGACTTAGCTGGGATGTCCGCTGCCGGACTCTACGACTCTAT TCCCAATGTGAGTCCATCAAACGCAGCCGTCTTTGGTAGTGCAGTTAGCCGAGTTTGGGGTTCGTTATACACGAGGAGAGCGGTCCTGAGCCGGAGAGCT GCTGGGGTGTCTCAGAAGGAGGCCACCATGGCTGTTCTGGTACAAGAAATGCTATCACCCGAGCTCTCGTTTGTACTCCACACACTCAGCCCGACTGATA ATGACAGCAACTTGGTGGAGGCCGAGATTGCTTCGGGACTCGGGGAGACCTTAGCGTCGGGAACCAGGGGCACTCCTTGGCGCATTTGTTCTGGGAAGTT GGACGGATCGGTGAAGACATTAGCGTTTGCAAACTTCAGCGAGGAAATGGTTGTTTTGGGTGGGTCGGCTGCAGACGGTGAAGTGCGCCATTTAACTGTG GATTACAGCAAGAAGGAATTGACAGTTGATTCAGGGTTCCGGAACCAGATCGGTCAGCGGCTTGGTGCGATCGGTTGCTACCTGGAGCGAGAGTTCGGGT GCCCGCAAGATGTGGAAGGCTGCATGGTTGGAGAAGAGGTGTATATAGTTCAAACACGGCCCCAGCCTCACTAG
AA sequence Show only first row Show all	>Lus10041275 pacid=23179924 polypeptide=Lus10041275 locus=Lus10041275.g ID=Lus10041275.BGIv1.0 annot-version=v1.0 MKQLKSNSSPGRVQLSICLRHQVQFGEHVVMLGSTKELGSWKKNVPLNWTEGGWVCDLEFKGGQSVEYKFAVVDNDKRTVWEGGENRNLQLPKEGSYDML CQWNATREHIDLLPTSSEQKQHKREKIVPNEASPPTHPDGEPSPFVGQWQGKAASFMRSNEHGNRESQMKWDTSGLEGLSLKLVESDQGARNWWMKLEVV RDLIASSLDSKDRMDALWINTGQIQCFEGGGHHRPNRHAEISRQIFRELERISSRKDTSPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPH DLKQEIKHTIQNKLHRNAGPEDLIATEAMLARITKNPGEYNAAFVEQFKIFHQELKDFFNAGSLAEQLESIKESFDDKGLSALRLFLDCKKILDASKQST SIVQLMETIQSLNGLRDTIGKGLESGLRNDASDAAIAMRQKWRLCEIGLEDYSFVLFSRFINELEAMGGAKWLTDNSESKCVSSWNDPLASLIVGVHQLA LSGWKPKECTAIENELRAWQERGLSEKEGDEDGRMIWALRLKATLDRARRLTEEYSEALLHIFPEKVQILGKALGVPENSVRTYTEAEIRAGVVFQVSKL CTLLLKAVRSTLGSQGWDVLVPGAAVGTLIQVESIVPGSLPPSAKGPIILVVSKADGDEEVTAAGSNIVGVVLLQELPHLSHLGVRARQEKVTFVTCEDE DRVAGIKMLVGKLVRYLDPGASARGVILLADADPLTSGAKAASCGRLASLAAVSSNVSNEKQVSASFQVPKGLVIPFGSMELALEQSKSTETFKSLIEQI EGATMEGGALDKLCSQLQELICSLQPPKDVLDSVTQVFLGNPCLIVRSSANVEDLAGMSAAGLYDSIPNVSPSNAAVFGSAVSRVWGSLYTRRAVLSRRA AGVSQKEATMAVLVQEMLSPELSFVLHTLSPTDNDSNLVEAEIASGLGETLASGTRGTPWRICSGKLDGSVKTLAFANFSEEMVVLGGSAADGEVRHLTV DYSKKELTVDSGFRNQIGQRLGAIGCYLEREFGCPQDVEGCMVGEEVYIVQTRPQPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	0	1
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	1.7	0.9160
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Lus10010457 [exp]	2.4	0.9096
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	2.4	0.8984
AT3G62010			unknown protein		Lus10009251 [exp]	2.8	0.8876
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	4.9	0.8970
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	5.0	0.8946
AT2G41220		GLU2	glutamate synthase 2 (.1)		Lus10003820 [exp]	5.5	0.8937
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	7.5	0.8762
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	9.8	0.8799
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	9.9	0.8875

Compare expression of checked genes

Lus10041275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.