Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66560 710 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G50840 563 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 526 / 5e-180 Phototropic-responsive NPH3 family protein (.1) AT5G03250 445 / 3e-149 Phototropic-responsive NPH3 family protein (.1) AT5G13600 428 / 1e-142 Phototropic-responsive NPH3 family protein (.1) AT3G44820 421 / 3e-139 Phototropic-responsive NPH3 family protein (.1) AT5G64330 365 / 2e-116 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G67385 356 / 1e-114 Phototropic-responsive NPH3 family protein (.1) AT5G48800 353 / 1e-113 Phototropic-responsive NPH3 family protein (.1) AT3G08660 328 / 4e-104 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037432 [exp] 1092 / 0 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 506 / 2e-172 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 499 / 1e-169 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 432 / 2e-143 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 427 / 2e-141 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 417 / 1e-137 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 416 / 2e-137 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 414 / 6e-137 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 412 / 2e-136 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130700 [exp] 788 / 0 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 784 / 0 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 523 / 3e-179 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 510 / 2e-174 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 462 / 1e-155 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 457 / 1e-153 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 453 / 4e-152 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 442 / 1e-147 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 437 / 1e-145 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 377 / 8e-122 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10041276 pacid=23179585 polypeptide=Lus10041276 locus=Lus10041276.g ID=Lus10041276.BGIv1.0 annot-version=v1.0 ATGGCTGACAAAGGAAAACCCTCCAAGGGCCAAGCCTGGTTCTGTACAGCTGGGATACCCAGTGACATTGTAATCGAGGTTGATGATATGAGCTTCCATC TCCAGAAGCGGCCTTTGATGGCGAAAAGTGGAACCCTTCGTCAGCTGATAACGGAGCAAGAGACAAACCCTACCTCTGCCGCTACACTCCAAACTTGCAC TGAACACCAAGGCGGCAGCGGCGACGACGACGACGAAATCGAAGAGGTTGAATGCCAGATTTCCCTCCCGGATTTTCCGGGCGGTTCCGAGACTTTCGAA ATGGTGGCCAAGTTCTGCTACGGGGTCAAGGTCGATCTCTCTTCCTCCACCGTCGCCCCACTCCGCTGCGCTGCCGAACTTCTGGAGATGACAGAGGAGT ACTCGGAAGACAATTTGATCTCCAGGACGGAGAGGTTCTTTGCTCAATCGGTTCTCAAGAGTCTCAAGGAATCTATCAAAGCACTGAAAACTTGCGAGCG ACTTATGCCTGTTGCCGAAACCCTAGGCATTCCGCAGCGCTGCATTGAATCCCTAGCCTCCAGAGCTTCCGCTGCAGATCCGGCTCTGTTTGGCTGGCCA GTCACGGAAGGCGAGAACAGCAGAGATTCCTCTAATCAAGCCCTGTGGAACGGAATCGAGTCAGCTGTGCGGAGGAAAGGATCTGCCGCTCCTGTTGATT CGTGGTGGTTGGAAGATCTTGCTCTTCTAAGCTTGCAAATGTTTAATCGGTTGATTTCCACTATGAAGGAGAGAGATCTGAGTCCAGACATTGTCGAGAG CTGCTTAATCTACTACGCTAGGAGGCATATTCCAGGGATCTCGAGACATAGTCGAAAACCACCGCCGACGGCGACATCTAGCACCATTGCTGGCTCAGAG GGGGAGCAGAGAGAAGCACTGGAATCAATCGTGTCCAATCTCCCACTAGAAAAGAGCTCCAGATCTGCTTCTTCATCAACTGCAACTAGATTTCTGATCG GGTTATTGAGAACCGCCAACATACTAAGCGCATCTCAATCGTGCCGTGCCGCACTGGAGAAGAAGATCGGCACACAGTTGGAACAAGCTACGCTAGATGA TCTTCTAATCCCGAGCTATTCCTATCTCAACGAAACTCTCTACGACGTCGATTGCGTCGAGAGAATCCTATCCCACTTCTTGGACGGACTTGATTCTGCG GACGATCCGGCCAATGAAAGAGCTCCGGCGGGGTTGATGCTGGTCGGAAAATTAATCGACGGCTACCTGGCCGAGATTGCATCCGATGCTAATTTAAAGC CAGAGAGATTCTACAAGCTGGCCACCTCGTTGCCGGAAAAGGCGAGACTTTTTGACGACGGTCTATACAGAGCCGTGGACGTCTATCTCAAGGCGCATCC ATGGATATCGGAGATGGAGAGGGAGAAGATATGCGGAGTAATGGAGTGCCAGAAGCTGACACTAGAAGCATGTACACACGCAGCGCAGAACGAACGGCTT CCTCTACGAGCGGTGGTGCAGGTTCTCTTCTTCGAGCAGCTACAGCTCCGCCACGCAATTGCTGGGACGCTGCAAGGAAGGCGGGAAGAGGTGGAGGAGG AGGAGGAGGAGGAGGAAGGAGAAGCGGTGGTTAGAGCAGACGACGTAAACGGAAAGTGGAGGGAGAATCAGGTGCTTCGGCTTGACATGGATAGCATGAG GAAGCGGGTGCAGCAGCTGGAGAAGGAGTGTTCCAGTATGAAGAAGGTGATCCAGAAGATAGGCAAGGACGACGGAGGAGGAGGTGTTGATAACGGCGGC GTTAAAACTGGGTGGAGAGGGTCGTCGTCGTCGTTGACCAAGAAGTTTGGGTGTAAGTTGAAGACTCAAGTGTGCGATTCTCACCAACAGGCGGTCGTGG GACCCAGGAAAGGGCGGCAACACCATCACCAAGACTAG
AA sequence Show only first row Show all	>Lus10041276 pacid=23179585 polypeptide=Lus10041276 locus=Lus10041276.g ID=Lus10041276.BGIv1.0 annot-version=v1.0 MADKGKPSKGQAWFCTAGIPSDIVIEVDDMSFHLQKRPLMAKSGTLRQLITEQETNPTSAATLQTCTEHQGGSGDDDDEIEEVECQISLPDFPGGSETFE MVAKFCYGVKVDLSSSTVAPLRCAAELLEMTEEYSEDNLISRTERFFAQSVLKSLKESIKALKTCERLMPVAETLGIPQRCIESLASRASAADPALFGWP VTEGENSRDSSNQALWNGIESAVRRKGSAAPVDSWWLEDLALLSLQMFNRLISTMKERDLSPDIVESCLIYYARRHIPGISRHSRKPPPTATSSTIAGSE GEQREALESIVSNLPLEKSSRSASSSTATRFLIGLLRTANILSASQSCRAALEKKIGTQLEQATLDDLLIPSYSYLNETLYDVDCVERILSHFLDGLDSA DDPANERAPAGLMLVGKLIDGYLAEIASDANLKPERFYKLATSLPEKARLFDDGLYRAVDVYLKAHPWISEMEREKICGVMECQKLTLEACTHAAQNERL PLRAVVQVLFFEQLQLRHAIAGTLQGRREEVEEEEEEEEGEAVVRADDVNGKWRENQVLRLDMDSMRKRVQQLEKECSSMKKVIQKIGKDDGGGGVDNGG VKTGWRGSSSSLTKKFGCKLKTQVCDSHQQAVVGPRKGRQHHHQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10041276 [exp]	0	1
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	6.6	0.7727
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	13.4	0.7490
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	15.3	0.7657
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	16.6	0.7727
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	20.0	0.7192
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10005249 [exp]	31.5	0.7087
AT1G05675			UDP-Glycosyltransferase superf...		Lus10003809 [exp]	33.5	0.6580
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	33.8	0.7065
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10024413 [exp]	38.9	0.6904
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	40.2	0.7097

Compare expression of checked genes

Lus10041276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.