Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21160 483 / 1e-154 LA RNA-binding protein (.1.2.3) AT5G36250 418 / 7e-135 Protein phosphatase 2C family protein (.1) AT3G02750 405 / 2e-129 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 399 / 5e-127 Protein phosphatase 2C family protein (.1) AT1G79630 388 / 1e-122 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 358 / 3e-112 Protein phosphatase 2C family protein (.1) AT4G03415 350 / 4e-109 Protein phosphatase 2C family protein (.1.2) AT5G01700 312 / 6e-97 Protein phosphatase 2C family protein (.1.2) AT5G27930 307 / 2e-94 Protein phosphatase 2C family protein (.1.2) AT3G05640 301 / 2e-92 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037431 [exp] 1371 / 0 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10022588 [exp] 559 / 0 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 544 / 0 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10000402 [exp] 401 / 2e-127 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 399 / 7e-127 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10018570 [exp] 373 / 3e-117 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10039802 [exp] 372 / 5e-117 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10033708 [exp] 363 / 4e-114 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 358 / 3e-112 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018100 [exp] 724 / 0 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.001G220100 [exp] 699 / 0 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.019G054200 [exp] 454 / 8e-148 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 432 / 8e-140 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 410 / 3e-131 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 405 / 6e-129 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 371 / 1e-116 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 369 / 6e-116 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 316 / 3e-96 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 315 / 5e-96 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10041277 pacid=23179518 polypeptide=Lus10041277 locus=Lus10041277.g ID=Lus10041277.BGIv1.0 annot-version=v1.0 ATGATGACGATGAAGAGGAGTGATTCGAAGCTGGAAGTATTGTTGCATAGGGTACCTGGGAGATTGTTCTTGAACAGCTCTTCGGATTGTGCTTCTCTCT TTACTAAGCCTGGGAAGAAAGGGGTTAATCAGGATGCCATGCTTTTTTGGGAGAATTTTGGTCCAAATGAAGACACGATATTCTGTGGTATCTTTGATGG CCATGGTCCGAGTGGTCATCTTGTTTCAAAGAAAGTGAGGGACTCCCTGCCCTTAAAACTGAAAGCACATTGGGAGCCAGATTCTAGCAACAGTGAGCTG GGCAGTGTGAGTGGTAATAGTATCGGAAGGACAGCATTAGCAGAGTTTTCACTCAACTCATTTCATTTGGAACCAGTGGAGAACTTGGATCATGATAAAA AGAAAATGCAGACTGACATTTTTTTGGCATTTAAAGCCACATTTTTGAAGGCCTTCAAGGCTATGGATAAGGAACTGCAATCTCATCCTTATATCGATTG CTTCTGCAGTGGGACAACAGCGGTAACCATGATCAAGCAGGGGCAGGATCTTGTTATTGGAAATGTTGGAGACTCGAGAGCTGTGTTGGGTACAAGAGAT AAAGGCAACAGCCTCATTGCAGTGCAGTTGACTGAAGATCTTAAACCGTCACTTCCAAGAGAAGCAGAGAGGATTAAGCAATGCAAGGGGCGGGTTTTCG CCCTTCCAAATGAACCAGACATTGCTAGAATTTGGCTGCCGAACAGCAACTCCCCTGGTCTCGCCATGACCCGAGCGTTTGGTGATTTCTGTCTGAAAAA CTTTGGCTTGATCTCAGTCCCCGAGGTTTCATACCATCGTATCACAGACAAGGACAAGTTTGTAGTGTTGGCTACTGATGGGGTATGGGATGTTTTGTCA AATGATGAGGTTGTGAGCATAGTTGGCTTGGTCTCACCTTCAAGCGCAGCTCAAACCCTGGTCGAATTCGCTAATCGAGCATGGAGGACCAAGTACCCGA CATCAAAGACAGATGACTGTGCTGCTGTCTGCCTATTCCTCAGCTCTGAGAAGGTGGCAGCGGCGGCCACGGCATCAGCGATGGGGATGGTGGACAATGA CAAGACTGGTGGTAGTGCGAGTAGTGGTGGGGGTGATCAGAAGAAAGAGGAGATGGTGGCTGTGGTGGCGAGTAATGAGCCGCCGCCGAAGTCGCCGTGG AAGAAGCCGACTATGGTGGCTGATGCTCCGGTGATGAGTGCTGCTAATGATGAGTCATGGCCTGCTCTTGCTGACGCTGGGCAACAGCATCATCAACAGC GCTCTAAGAATCTGGATACTGGTAGTGCTGAATCAGTGGCGAATACTGACGTGATTGCTCCTCCAACCACTGAACAACGACACCAACACCAGGGATCTTC AGGGCAACCAAAGCCACATAGCGGACACCCTAACTCCGTGCATAGATACCCGAGGCATCCGAAATCAGGGCCTAAGCGGAATCCAAATGCTCCACCTCCT TTCCCTGGACCTTTACCTTACCAGCAACCAATGATGCCACAAGTCTTTCATGCTGTAGTACCTCCACCTTACATTGCTGTTCCTAGTCATGCTTACCAGC CTGGACCTGCACCTTTTCCCACTGTCGAACCTCATTTGGTAAAGCCTGGATCCGAAACGCCCCCAATTCAACCTTTTGCCACACCAGTTAACGTCCAGCC TCCAGTACGGGGTGAATCCGATGGTAGTCTTCCAAATTTTCCGAATAGAAGACCTAATGTGCAAGAGTCCGGTGGCCATACATGGCATCAACGACCGTTC AATCCCAGAGACAATGTTCCTATGCACCAGGGAATGGGGCCAAGGCCTATGCTCAGACCTCATTTTTTCCCTCCAGGTCCAGGCTTCATGGTTGGTCCAG CCTTTCCTGGTACAGCTGTGTATAGTATGCCTATGGTTCCGCCAGGTGGCTTTAGGGGGCCTCATCCACCCCATTTAATTCCATTTCCTGTCAATCCAGG AGATCATATGCTCCCTCCAGAGACAATAACATTGAAATTTAACGTAATAAGACAAGTAGAGTATTATTTCAGTGATGAAAATCTGCAAACTGACAGTTAT CTTGTCTCCTTGATGGATGAACAAGGATGGGTTCCGATATCAACCATTGCTGACTTTAAGAGACTTAAAAGGATGACTACAGATACAAAATTTATAATTG ATGCACTACAAAGTTCTAATGCAGTGGAAGTACAGGCTGACAAAGTTCGGAAACGTGATGGCTGGTCAAAGTGGATTCCTGTTTCAAATGAGCAGGCAAA GAATTTAAAAAATCTGCCTTCTGAAGGTCCCGAAAACCTACCAGATGCTACTGATTTGGAGAAGCAAGAATTTGGGAATAGGAGTATGGATTCTGCTGCA CATTTTTCTATTGGAAGTGAGCGTCCAATTCTGGATGGTTCTGAAGAGAAGGAGAAGCCAACATCATTGCAAGTTGATGTGCAGAATCTTGACGATCTGT CTAATGATTTTGCAAGCACATTTATGCTTGACGAGGAGCTGGAGCTTGAGCAGAAAATGCTGAAAAGTGATTGCATTTCTCCGCGTAGAAGAGTTGATGA TGATGATGATGAGGAGGTGGTGGTCAATGATCAGGATGTTCACAGACTAGTAATTGTCACTCAGAATACTATCATAGATGGAGAATCAAAGTCGGGCGGT TCAGATTCCAAACGCATCTCAAATGAGCTTGCTACTGCAATAAATGACGGTCTCTATTTCTATGAACAGGAGCTCAAAGCTAAGCGTAGCAATCGTAGAA AGAATAGCTACGAGCCTAGAGATGGGAACTTGAGGTCTACAAATAATGCTCCAGGAATATCTAATACTAGGGCTGGTGAAAGTCCTAGAGGTAATTCCCA CGAGGAATCTCAAAGCGGTAATAGTATTAGGAAACAGAATAGGAATACCTCGAAGCAACATTTGTCTCATAAGCAAAGATTCTTCTCGAGCAACTTCAGG AATCATGGCGCTGGTCGTAAACCAATAGGGGCAATATCAGAAAGTCCACCAAGTAAATCAGTTGGGTTTTTCTTTAGTTCTACTCCACCTGAGAACCCAA GCATTAGATCTTCGAAGTTAAGTGTTTCACCTCACAGCAATCTTTCAGGGAGTAGCCCACCAGTTGGTTGCACTCCAAAGTCACTTCCTCTATTTCAACA TCCGAGTCATCAGCTTTTGGAAGAAAATGGTTTTAAGCAGCAGAAGATTTATGGTATGTCAATGTACAATGAGTTCCGTAAACTGGCGCTAGAGGATGCT GACGCCAATTATAACTACGGGATGGAATGTCTTTTCCGGTTCTATAGTTACGGGTTGGAGAAGAAGTTTGTGGAGGAGTTATACAAGGACTTTGAAGATC TCTCTCTCGAGTTCTACCGTCGAGGCAATCTCTACGGCCTCGAAAAATATTGGGCTTTCCATCATTACCGTGGCAGCAAAGAGGCACTTAGGAAAGACCC AGAACTAGATAAATTACTGAAAGAAGAGTATCGTAGTTTGGAAGACTTCCGAGCCAAGGAGAGGGCCGCCGGTGCTCCGCAATGA
AA sequence Show only first row Show all	>Lus10041277 pacid=23179518 polypeptide=Lus10041277 locus=Lus10041277.g ID=Lus10041277.BGIv1.0 annot-version=v1.0 MMTMKRSDSKLEVLLHRVPGRLFLNSSSDCASLFTKPGKKGVNQDAMLFWENFGPNEDTIFCGIFDGHGPSGHLVSKKVRDSLPLKLKAHWEPDSSNSEL GSVSGNSIGRTALAEFSLNSFHLEPVENLDHDKKKMQTDIFLAFKATFLKAFKAMDKELQSHPYIDCFCSGTTAVTMIKQGQDLVIGNVGDSRAVLGTRD KGNSLIAVQLTEDLKPSLPREAERIKQCKGRVFALPNEPDIARIWLPNSNSPGLAMTRAFGDFCLKNFGLISVPEVSYHRITDKDKFVVLATDGVWDVLS NDEVVSIVGLVSPSSAAQTLVEFANRAWRTKYPTSKTDDCAAVCLFLSSEKVAAAATASAMGMVDNDKTGGSASSGGGDQKKEEMVAVVASNEPPPKSPW KKPTMVADAPVMSAANDESWPALADAGQQHHQQRSKNLDTGSAESVANTDVIAPPTTEQRHQHQGSSGQPKPHSGHPNSVHRYPRHPKSGPKRNPNAPPP FPGPLPYQQPMMPQVFHAVVPPPYIAVPSHAYQPGPAPFPTVEPHLVKPGSETPPIQPFATPVNVQPPVRGESDGSLPNFPNRRPNVQESGGHTWHQRPF NPRDNVPMHQGMGPRPMLRPHFFPPGPGFMVGPAFPGTAVYSMPMVPPGGFRGPHPPHLIPFPVNPGDHMLPPETITLKFNVIRQVEYYFSDENLQTDSY LVSLMDEQGWVPISTIADFKRLKRMTTDTKFIIDALQSSNAVEVQADKVRKRDGWSKWIPVSNEQAKNLKNLPSEGPENLPDATDLEKQEFGNRSMDSAA HFSIGSERPILDGSEEKEKPTSLQVDVQNLDDLSNDFASTFMLDEELELEQKMLKSDCISPRRRVDDDDDEEVVVNDQDVHRLVIVTQNTIIDGESKSGG SDSKRISNELATAINDGLYFYEQELKAKRSNRRKNSYEPRDGNLRSTNNAPGISNTRAGESPRGNSHEESQSGNSIRKQNRNTSKQHLSHKQRFFSSNFR NHGAGRKPIGAISESPPSKSVGFFFSSTPPENPSIRSSKLSVSPHSNLSGSSPPVGCTPKSLPLFQHPSHQLLEENGFKQQKIYGMSMYNEFRKLALEDA DANYNYGMECLFRFYSYGLEKKFVEELYKDFEDLSLEFYRRGNLYGLEKYWAFHHYRGSKEALRKDPELDKLLKEEYRSLEDFRAKERAAGAPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	0	1
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	2.0	0.8967
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033458 [exp]	8.7	0.8934
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10017408 [exp]	10.8	0.8842
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	10.8	0.8937
					Lus10013097 [exp]	13.3	0.8801
AT5G05520			Outer membrane OMP85 family pr...		Lus10009835 [exp]	13.6	0.8720
					Lus10014954 [exp]	14.8	0.8933
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	14.9	0.8784
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10036908 [exp]	15.0	0.8879
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10009311 [exp]	16.7	0.8555

Compare expression of checked genes

Lus10041277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.