Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05850 479 / 1e-171 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G16920 439 / 2e-155 ATCTL2 chitinase-like protein 2 (.1) AT3G12500 188 / 3e-57 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT1G02360 178 / 4e-54 Chitinase family protein (.1) AT4G01700 170 / 6e-51 Chitinase family protein (.1) AT2G43610 94 / 4e-22 Chitinase family protein (.1) AT2G43570 94 / 5e-22 CHI "chitinase, putative", chitinase, putative (.1) AT2G43590 91 / 3e-21 Chitinase family protein (.1) AT2G43620 87 / 1e-19 Chitinase family protein (.1) AT2G43580 87 / 2e-19 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037430 [exp] 609 / 0 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037428 [exp] 556 / 0 AT1G05850 489 / 1e-175 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037737 [exp] 432 / 5e-153 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10016872 [exp] 343 / 2e-119 AT3G16920 354 / 5e-124 chitinase-like protein 2 (.1) Lus10041282 [exp] 206 / 3e-67 AT1G05850 192 / 2e-62 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10038026 [exp] 171 / 2e-51 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10009968 [exp] 171 / 3e-51 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10041830 [exp] 172 / 4e-51 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 171 / 8e-51 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141600 [exp] 461 / 1e-164 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1) Potri.014G146600 [exp] 446 / 1e-158 AT3G16920 456 / 2e-162 chitinase-like protein 2 (.1) Potri.014G111800 [exp] 184 / 1e-56 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182000 [exp] 184 / 4e-56 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 181 / 7e-55 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 182 / 8e-55 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 181 / 2e-54 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.002G186500 [exp] 176 / 4e-53 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.009G142150 [exp] 171 / 6e-52 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182100 [exp] 174 / 1e-51 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10041278 pacid=23179624 polypeptide=Lus10041278 locus=Lus10041278.g ID=Lus10041278.BGIv1.0 annot-version=v1.0 ATGGCTGCCCCCAACCGCAGCATTTCTGCCGTCTCGCTGCTCCTGCTACTGTGCGTGGTGAACTTGTCGGCGGTTGTTCGCGGCGATGAATCGGAGGAGG TTGTGGTGGTGAAGAAGGTGAAGGGAAAGAAGTACTGTACGAAGGGTTGGGAATGTAGAACGGCTTCCGTTTACTGCTGCAACCAGACGATTTCGGATAT CTTCCAGGTTTACCAGTTCGAGGAGCTCTTCGCCAAGAGGAATACCCCCATCGCTCACGCCGTGGGGTTCTGGGATTACCAGTCCTTCATTATCGCTTCC TCTATGTTCCAGCATCTCGGATTCGGTACCACCGGAGGGAAGCTCATGCAGATGAAGGAGATCGCCGCTTTCCTTGGCCATGTCGGCGCCAAAACTTCTT GTGGTTATGGAGTGGCAACCGGAGGGCCGACCGCCTGGGGTCTATGCTTCAACAGGGAATTGAGCCCTTCCCAGAAGTACTGTGACGACTACTACAAAGA TACATATCCTTGTTCTCCTGGAGCTGATTACTATGGCCGCGGTGCCATTCCTATTTACTGGAATTACAACTATGGTGCCGTTGGAGAAGCTCTCAAGGTG GATTTGTTGAACCATCCTGAGTACATTGAGCAAAATGCTACGCTTGCTTTCCAGGCTGCCATATGGAGATGGGTGACACCGATTAAGAAGTCGCAGCCTT CAGCTCATGATGTTTTCGTTGGCAACTGGAAGCCGACTAAGAACGACACCCTGTCAAAGCGTGTTCCCGGGTTTGGCTCGACAATGAACCTTCTCTATGG TGACAGCGTTTGCGGCCAGGGGGATATCGATCCCATGAACAGCATCATCTCACACTACCTTTACTACCTTGACTTGATGGGTATAGGCCGGGAGGATGCC GGGACTCATGATGTCTTGACTTGCGAGGAGCAAGCTCCATTCAACCCACCAAAGGCCAAGCCTAGTCAATCCTCGTAA
AA sequence Show only first row Show all	>Lus10041278 pacid=23179624 polypeptide=Lus10041278 locus=Lus10041278.g ID=Lus10041278.BGIv1.0 annot-version=v1.0 MAAPNRSISAVSLLLLLCVVNLSAVVRGDESEEVVVVKKVKGKKYCTKGWECRTASVYCCNQTISDIFQVYQFEELFAKRNTPIAHAVGFWDYQSFIIAS SMFQHLGFGTTGGKLMQMKEIAAFLGHVGAKTSCGYGVATGGPTAWGLCFNRELSPSQKYCDDYYKDTYPCSPGADYYGRGAIPIYWNYNYGAVGEALKV DLLNHPEYIEQNATLAFQAAIWRWVTPIKKSQPSAHDVFVGNWKPTKNDTLSKRVPGFGSTMNLLYGDSVCGQGDIDPMNSIISHYLYYLDLMGIGREDA GTHDVLTCEEQAPFNPPKAKPSQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041278 [exp]	0	1
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	2.2	0.8807
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	5.3	0.8431
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	7.2	0.8501
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	8.7	0.8492
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	9.8	0.8142
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	9.9	0.8245
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	11.0	0.8183
AT4G31490			Coatomer, beta subunit (.1)		Lus10027160 [exp]	13.3	0.8044
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	17.2	0.8367
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	17.9	0.7905

Compare expression of checked genes

Lus10041278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.