Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52790 299 / 2e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 205 / 2e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 205 / 3e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52820 191 / 5e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 180 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 159 / 3e-47 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 125 / 2e-34 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 105 / 7e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 94 / 6e-23 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25420 82 / 4e-18 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016659 [exp] 200 / 2e-63 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 179 / 3e-55 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005773 [exp] 154 / 2e-45 AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 151 / 4e-44 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005776 [exp] 144 / 2e-41 AT1G52790 198 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023160 [exp] 140 / 6e-41 AT1G52820 244 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008097 [exp] 135 / 5e-38 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006575 [exp] 128 / 3e-36 AT1G52820 221 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 128 / 5e-35 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176000 [exp] 323 / 1e-111 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 222 / 6e-72 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 205 / 2e-65 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 200 / 1e-63 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 168 / 2e-50 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 166 / 2e-50 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 157 / 8e-47 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 157 / 1e-46 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G065400 [exp] 79 / 5e-17 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 78 / 1e-16 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10041281 pacid=23179572 polypeptide=Lus10041281 locus=Lus10041281.g ID=Lus10041281.BGIv1.0 annot-version=v1.0 ATGAAAAACAAGTATGAAGAGCCAGGGCACGGTTATGTGGGACAGATTGCCAAACTTCCTCTCCATGAAAGCATGGGCATCCACAATGCATCTCGATCCG ATGCCATAGCTGATTTCACCGCTCTCATGTGGCCTCATCGCGGAAACCACTGCTTCAGGGAGAAAGTGGATAGATACGCGAAGCTAGCATCAGAGCTAGA CAAAACAGTGACGAGGATGATATTCGAAAGCTACGGAATCGATCAGAAGCACCACGACGCCTACGTGGAGTCCACGAGCCATCTACTCCGGCCGCTGAAG AACAGAGCTCCGGTCGGAGACGAACCTCATTTGGGGTTCGTCAGTCACACCGACAAGAGTTTCACTACCATACTCCATCAGAACCAGGTAGAGGGTCTGG AGATCTACGCCGTTAATAACATCAACGGCTGTAACAAGATCAGCGTCACATTTTCATCCCCGGCTTCGTTCGTGGTCGTAGCCGGAGATGCCTTGATGGC GTGGAGCAACGACAGGATAATTTCTCCGACGCACAGAGTGATAATGAACGGGGAAGTGGACAGATACTCGATGGGGCTGTTCGGGTTCAGCAAAGGGATG ATTCAAGTGCCTCAAGAGTTTGTTGATGAACAGCATCCGTTGAGGTACATGCCGTTCGATCATCTTGGACTGCTTCGCTTCTTCCGTACTGAGGAAGGTT GCAAGTCCTAG
AA sequence Show only first row Show all	>Lus10041281 pacid=23179572 polypeptide=Lus10041281 locus=Lus10041281.g ID=Lus10041281.BGIv1.0 annot-version=v1.0 MKNKYEEPGHGYVGQIAKLPLHESMGIHNASRSDAIADFTALMWPHRGNHCFREKVDRYAKLASELDKTVTRMIFESYGIDQKHHDAYVESTSHLLRPLK NRAPVGDEPHLGFVSHTDKSFTTILHQNQVEGLEIYAVNNINGCNKISVTFSSPASFVVVAGDALMAWSNDRIISPTHRVIMNGEVDRYSMGLFGFSKGM IQVPQEFVDEQHPLRYMPFDHLGLLRFFRTEEGCKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10041281 [exp]	0	1
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041283 [exp]	5.0	0.8176
AT2G22730			Major facilitator superfamily ...		Lus10003528 [exp]	11.4	0.8700
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	16.3	0.8209
AT1G22930			T-complex protein 11 (.1.2)		Lus10001363 [exp]	18.0	0.8368
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	21.0	0.8676
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	24.0	0.8686
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10005754 [exp]	29.0	0.8367
AT4G28260			unknown protein		Lus10018587 [exp]	33.5	0.8428
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	33.6	0.8457
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	39.6	0.8253

Compare expression of checked genes

Lus10041281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.