Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05850 193 / 1e-62 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G16920 181 / 2e-57 ATCTL2 chitinase-like protein 2 (.1) AT1G02360 108 / 4e-30 Chitinase family protein (.1) AT4G01700 107 / 2e-29 Chitinase family protein (.1) AT3G12500 102 / 4e-27 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT2G43570 83 / 3e-20 CHI "chitinase, putative", chitinase, putative (.1) AT2G43590 80 / 4e-19 Chitinase family protein (.1) AT2G43610 76 / 2e-17 Chitinase family protein (.1) AT2G43580 76 / 2e-17 Chitinase family protein (.1) AT2G43620 74 / 1e-16 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037428 [exp] 219 / 1e-72 AT1G05850 489 / 1e-175 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037430 [exp] 207 / 5e-68 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041278 [exp] 207 / 6e-68 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10016872 [exp] 174 / 2e-56 AT3G16920 354 / 5e-124 chitinase-like protein 2 (.1) Lus10037737 [exp] 159 / 4e-49 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10009968 [exp] 106 / 5e-29 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10038026 [exp] 106 / 5e-29 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10028377 [exp] 97 / 3e-25 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10041830 [exp] 97 / 3e-25 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146600 [exp] 188 / 1e-60 AT3G16920 456 / 2e-162 chitinase-like protein 2 (.1) Potri.010G141600 [exp] 182 / 3e-58 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1) Potri.014G111800 [exp] 108 / 6e-30 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.002G186500 [exp] 105 / 1e-28 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.004G182000 [exp] 100 / 9e-27 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 96 / 2e-25 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182100 [exp] 94 / 4e-24 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 94 / 6e-24 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 92 / 2e-23 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 86 / 3e-21 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10041282 pacid=23179810 polypeptide=Lus10041282 locus=Lus10041282.g ID=Lus10041282.BGIv1.0 annot-version=v1.0 ATGTTGAAATTGTATTTTACGGGTGGTTATGGAGTGGCAACCGGAGGGATCACCGCCTGGGGTCTATGCTACAACAGGGAAATGAGCCCTTCACAGTCCT ACTGTGATGGCTACTGCAAAGATACATATCCTTGTTCTCCTGGAGCTGATTACTATGGCCGCGGTGCCATTCCGATTTACTGGAATTATAACTATGGTAC CGTTGGAGAAGCTATCAAGGAGGATTTGTTGAACCATCCCGAGTACATTGAGCAAAATGCTACGCTTGCTTTCCAGGCTGCCATATGGAGATGGATGACC CCAATCAAGAAGTCGCAACCTTCAGCTCATGATGTCTTCGTTGAAACTGGAAGCTGA
AA sequence Show only first row Show all	>Lus10041282 pacid=23179810 polypeptide=Lus10041282 locus=Lus10041282.g ID=Lus10041282.BGIv1.0 annot-version=v1.0 MLKLYFTGGYGVATGGITAWGLCYNREMSPSQSYCDGYCKDTYPCSPGADYYGRGAIPIYWNYNYGTVGEAIKEDLLNHPEYIEQNATLAFQAAIWRWMT PIKKSQPSAHDVFVETGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041282 [exp]	0	1
AT3G07800			Thymidine kinase (.1)		Lus10006394 [exp]	2.4	0.7325
AT1G53210			sodium/calcium exchanger famil...		Lus10017657 [exp]	4.9	0.7547
					Lus10013609 [exp]	17.7	0.6719
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10021416 [exp]	22.5	0.6638
AT4G28650			Leucine-rich repeat transmembr...		Lus10014243 [exp]	24.5	0.6723
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	29.1	0.7021
AT2G30480			unknown protein		Lus10019109 [exp]	43.0	0.6624
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024578 [exp]	112.5	0.6239
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041153 [exp]	117.5	0.6376
AT3G28630			Protein of unknown function (D...		Lus10001124 [exp]	144.6	0.6357

Compare expression of checked genes

Lus10041282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.