Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05850 91 / 9e-24 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G16920 76 / 3e-18 ATCTL2 chitinase-like protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037428 [exp] 127 / 8e-38 AT1G05850 489 / 1e-175 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041278 [exp] 124 / 1e-36 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037430 [exp] 123 / 4e-36 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037737 [exp] 82 / 2e-20 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10016872 [exp] 80 / 2e-20 AT3G16920 354 / 5e-124 chitinase-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141600 [exp] 90 / 2e-23 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1) Potri.014G146600 [exp] 66 / 1e-14 AT3G16920 456 / 2e-162 chitinase-like protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041283 pacid=23179979 polypeptide=Lus10041283 locus=Lus10041283.g ID=Lus10041283.BGIv1.0 annot-version=v1.0 ATGAACATTCTATATGGTGACAGCGTTTGCGGCCAGGGTGTTATTGATGACATGAACAGCATTATCTCCCATTACCTTTACTACCTTGACTTGATGGGTG TAGGCCGGGAGGATGCTGGGACTCATGATGTCCTCACTTGTGAGGACCAAGCTCTATTCAACCCACCAAAGGCCAAACCTAGTCAAGCCTCGTAA
AA sequence Show only first row Show all	>Lus10041283 pacid=23179979 polypeptide=Lus10041283 locus=Lus10041283.g ID=Lus10041283.BGIv1.0 annot-version=v1.0 MNILYGDSVCGQGVIDDMNSIISHYLYYLDLMGVGREDAGTHDVLTCEDQALFNPPKAKPSQAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041283 [exp]	0	1
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10041281 [exp]	5.0	0.8176
AT1G11920			Pectin lyase-like superfamily ...		Lus10018430 [exp]	124.7	0.6971
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	127.9	0.7187
AT2G48140		EDA4	embryo sac development arrest ...		Lus10022067 [exp]	171.4	0.7090

Compare expression of checked genes

Lus10041283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.