Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55200 45 / 4e-05 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037427 [exp] 375 / 3e-133 ND / Lus10018944 [exp] 58 / 1e-09 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000773 [exp] 56 / 4e-09 AT5G56790 74 / 2e-14 Protein kinase superfamily protein (.1) Lus10015454 [exp] 48 / 3e-06 AT5G22480 719 / 0.0 ZPR1 zinc-finger domain protein (.1) Lus10006148 [exp] 47 / 7e-06 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 47 / 1e-05 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001350 [exp] 45 / 3e-05 AT5G22480 724 / 0.0 ZPR1 zinc-finger domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146500 [exp] 226 / 2e-74 AT1G55200 52 / 1e-07 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G141900 [exp] 132 / 3e-38 ND / Potri.005G185500 [exp] 63 / 2e-11 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.001G224800 [exp] 61 / 2e-10 AT5G56790 249 / 1e-73 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 51 / 3e-07 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041284 pacid=23179672 polypeptide=Lus10041284 locus=Lus10041284.g ID=Lus10041284.BGIv1.0 annot-version=v1.0 ATGTCACTGTCATATGACAAGATGAGAGAAGGAAGACCAGTCAGGTCCTGTCCCCGATCCAATCCTGTTGCTGAGGTTTTGATACCAAGGGAATCGCCCG GTTCCACTGGAAAACATCTAGTGATTGTGATGGATGCAATGAAGGAGTTCTCCACGGAGCCCCTTCAGTGGGCACTGGACTTTGTTATTGAGGTTGGATG GTCAGTTACCCTCCTTGGAGTCATGCCATGGGTTCCCTTCCCTTTCTCGTGCAATATAAGGTTAGATGTTTGGAGACATGTTCTTGAAGATATGCAAGGT CAGAAGGGGATGAGTGAGTGGATAAATGACCCGAAACACCAGAAGATACAGGAGATGGTAGAGGCTTGCAAGCAGAAACGGGTGGTTCCTTGCATGAAAG TGGCAATGGGATATCCTCTGAAGCTTGTGGTTCTTGAGCAAATTACAAGCATTCATGCTACCTTTGTGGTTCTTGAAAGGCATCTGAGGAAGCACAAAGC ATTCTTGGCAGAGAGGTTGCCGTGCAGTGCAGTTATGATGAATAGGCATGGAGGGGTGGATGTGATCAAACTGAAAGCAAGAACTCACGGGGAGTTGGAC TCAACGGCAGGAGTTCCAGGAGAATCTCCAGCGACAGTAGTTCCGACACCAGAAGTTATCCTCTCCGAGGAGCTGCTGGGACGGCTGAGGCGGCAGACTA GCATTTGA
AA sequence Show only first row Show all	>Lus10041284 pacid=23179672 polypeptide=Lus10041284 locus=Lus10041284.g ID=Lus10041284.BGIv1.0 annot-version=v1.0 MSLSYDKMREGRPVRSCPRSNPVAEVLIPRESPGSTGKHLVIVMDAMKEFSTEPLQWALDFVIEVGWSVTLLGVMPWVPFPFSCNIRLDVWRHVLEDMQG QKGMSEWINDPKHQKIQEMVEACKQKRVVPCMKVAMGYPLKLVVLEQITSIHATFVVLERHLRKHKAFLAERLPCSAVMMNRHGGVDVIKLKARTHGELD STAGVPGESPATVVPTPEVILSEELLGRLRRQTSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55200			Protein kinase protein with ad...		Lus10041284 [exp]	0	1
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	6.0	0.8121
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10024868 [exp]	10.7	0.8353
					Lus10007750 [exp]	21.5	0.8228
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10037414 [exp]	21.9	0.8254
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	24.7	0.8103
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	31.2	0.8173
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040311 [exp]	31.9	0.8011
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	40.8	0.8051
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	56.4	0.7328
AT1G07710			Ankyrin repeat family protein ...		Lus10025287 [exp]	57.8	0.7866

Compare expression of checked genes

Lus10041284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.