Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14780 504 / 2e-172 MAC/Perforin domain-containing protein (.1) AT4G24290 488 / 3e-166 MAC/Perforin domain-containing protein (.1.2) AT1G28380 447 / 3e-150 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G29690 415 / 2e-138 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037426 [exp] 1227 / 0 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 496 / 5e-169 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 466 / 2e-157 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 460 / 3e-155 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 451 / 2e-152 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 449 / 4e-151 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 407 / 3e-135 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10034586 [exp] 413 / 2e-133 AT1G14780 567 / 0.0 MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 399 / 3e-132 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G234700 [exp] 960 / 0 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 542 / 0 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 535 / 0 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 505 / 4e-173 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 488 / 1e-166 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 473 / 8e-161 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 468 / 2e-158 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 461 / 1e-155 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.016G135100 [exp] 406 / 1e-134 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 405 / 3e-134 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10041285 pacid=23179864 polypeptide=Lus10041285 locus=Lus10041285.g ID=Lus10041285.BGIv1.0 annot-version=v1.0 ATGTCCATGGAGGCGGCCGAGAAGCCGATTGAGCTCAGGGCAATTGACGCCTTGGGGAAAGGCTTCGACCTCAGCAGCGATTTCAGGTTGAAGTTCGCCA AGAGCGCCGCCGGGAAACTGCTGGCCCTCGTCGAGCGGAACAAGAGGGACATTATAATCCCTTCCGGCGGCGGCAGTGGCGGAGTTACTGTTCCTGACGT CTCCGAGGATATTCATGTCGATAAAGGCGATCGGATTCGGTTCAAGTCCGACGTCCTGGAGTTCAATCAGATGTCAGAGCTGCTTAATCAGAGATCTTCA ATACAAGGAAAAGTTCCTTCTGGCTATGCCAATGCTCTGTTTGACTTGAGTGGAGACTGGCTCCTTGATGCCACAGACACTAAATGTCTTGCTTTTGATG GCTACTTCATCTCTTTGTACAACTTGCACCTAACAGCATCTCCACTTGTGCTCCATGACAAAGTGAAGAATTCAGTTCCCCCTCGTTGGGATCCGGCACT ACTGTCCAGGTTCATACGGACATATGGCACGCACATAATCATAGGGATGGCAATTGGAGGTCAGGATGTTATATGCGTTAGACAAAAACACTCCTCAACC ATTTCTCCTGCCAATCTCCGGAAGAATTTGGAGGATCTCGGAGATTTTCTGTTTTCAGATGGCAGAAGTCCATCCCTGATGCATGGAAATGCAAGAGATG GCAAGCAAAAGATTCCTGAGGTTTTCAATAGGATTCTGCAGTCAAACACCATGCAACTGACCAGCATCACAGAAACGTCAAGCAAGGAGGGTCTCACCAT CGTTTGTTCGAAAAGGGGAGGGGACGTGTTCTCACATAGTCATTCTAACTGGTTACAAACCGTCCCTGCAAAGCCAGAAGCAATCCTTTTCAAGTTTGTG CCGATTACTTCTCTTCTCGCTGGGGTTCCTGGCAGTGGATTTCTCAGTCATGCTATCAACTTGTATTTACGATACAAGCCTACACCTGACGATCTACAAT GCTTTTTGGAATACCAAGTACCAAAGCAATGGGCACCCATGTTCTGCGAGTTAACTCTGCGGCATCAAAGGAAGAAGGCCTCCTCCCCATCTCTGCGATT CAGCTTTATGGGTCCTCGGCTATATGTTAGTTCCACCCAGGTTTCAAGTGATCAAAAACCAGTTGTTGGATTGCGGTTGTATCTCGAAGGAAAGAAGTGC AACAAGCTTGCCATACATATTCAGCATCTGTCAAGCCTTCCAAATATTATGAACTCATCAGCTAACGCCTCGGACACCAAACCATGCCAATGGCAAGGCT CCGATCAGTACGCATCAAGCGACCAATTCCTTGAACCGGTTCGATGGAAGAGATACTCAAAGATCTGCACTTCTGTCGTCAAGCACGATCAGAGTTGGCT GCACGGAGACTTGACAGGGGTTTTCGTGGTAACCGGTGCGCAGCTTCAAAGCAAAGGAAGATGGCCAAACTCAGTACTCCACCTGCGTCTACTATTCACC CACTTACCATACTGCAGCATTCGGAAGACCGAATGGGCAGCTGTTCCAGAAGCTTCTCACAAAACAAGCCTCCTGACGAATATCAGCACAACATTCACGT TCACTCAGCGGACGAACCCTGGTCAGAACAAACAGCAAGCTCCGGCGGCACTTAACTCCGGTGTGTATGCAGAGGGCCCGCCAGTTCCGGTTAGCTCACG GAAGCTTCTTAAGTATGTAGAGACTGCTGAGGTGGTGCGAGGGCCTCATGATGCCCCGGGACATTGGTTGGTGACGGCGGCTAAGCTAGTAGGCGAGGGT GGTAAGATTGGGTTACATGTGAAGTTTGCACTGCTGGACTATCCAGATTGCTGA
AA sequence Show only first row Show all	>Lus10041285 pacid=23179864 polypeptide=Lus10041285 locus=Lus10041285.g ID=Lus10041285.BGIv1.0 annot-version=v1.0 MSMEAAEKPIELRAIDALGKGFDLSSDFRLKFAKSAAGKLLALVERNKRDIIIPSGGGSGGVTVPDVSEDIHVDKGDRIRFKSDVLEFNQMSELLNQRSS IQGKVPSGYANALFDLSGDWLLDATDTKCLAFDGYFISLYNLHLTASPLVLHDKVKNSVPPRWDPALLSRFIRTYGTHIIIGMAIGGQDVICVRQKHSST ISPANLRKNLEDLGDFLFSDGRSPSLMHGNARDGKQKIPEVFNRILQSNTMQLTSITETSSKEGLTIVCSKRGGDVFSHSHSNWLQTVPAKPEAILFKFV PITSLLAGVPGSGFLSHAINLYLRYKPTPDDLQCFLEYQVPKQWAPMFCELTLRHQRKKASSPSLRFSFMGPRLYVSSTQVSSDQKPVVGLRLYLEGKKC NKLAIHIQHLSSLPNIMNSSANASDTKPCQWQGSDQYASSDQFLEPVRWKRYSKICTSVVKHDQSWLHGDLTGVFVVTGAQLQSKGRWPNSVLHLRLLFT HLPYCSIRKTEWAAVPEASHKTSLLTNISTTFTFTQRTNPGQNKQQAPAALNSGVYAEGPPVPVSSRKLLKYVETAEVVRGPHDAPGHWLVTAAKLVGEG GKIGLHVKFALLDYPDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	0	1
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	3.0	0.8954
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	4.5	0.8809
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	4.5	0.8652
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	4.6	0.8869
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	4.9	0.8773
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	6.3	0.8863
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	9.7	0.8928
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	11.0	0.8735
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	13.5	0.8586
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	14.3	0.8627

Compare expression of checked genes

Lus10041285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.