Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21170 289 / 1e-97 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT4G16360 245 / 1e-80 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT2G28060 88 / 2e-21 5'-AMP-activated protein kinase beta-2 subunit protein (.1) AT1G09020 54 / 7e-08 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 49 / 3e-06 5'-AMP-activated protein kinase-related (.1) AT3G01510 42 / 0.0004 LSF1 like SEX4 1 (.1) AT5G39790 42 / 0.0004 5'-AMP-activated protein kinase-related (.1) AT5G03420 41 / 0.0009 5'-AMP-activated protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037424 [exp] 429 / 8e-153 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10038783 [exp] 224 / 7e-72 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10039076 [exp] 224 / 1e-71 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10006390 [exp] 155 / 3e-45 AT4G16360 222 / 3e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10012343 [exp] 150 / 4e-44 AT4G16360 220 / 1e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10003355 [exp] 97 / 8e-25 AT2G28060 150 / 2e-48 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10008427 [exp] 96 / 1e-24 AT2G28060 157 / 6e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10029909 [exp] 59 / 1e-09 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 59 / 2e-09 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G220800 [exp] 301 / 3e-102 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G021600 [exp] 298 / 4e-101 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.016G006400 [exp] 237 / 3e-77 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.006G005800 [exp] 236 / 1e-76 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.014G167400 [exp] 183 / 5e-56 AT4G16360 206 / 2e-65 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.009G008700 [exp] 90 / 2e-22 AT2G28060 158 / 2e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.004G213600 [exp] 86 / 7e-21 AT2G28060 156 / 8e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.010G034600 [exp] 51 / 5e-07 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 50 / 9e-07 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.013G020400 [exp] 48 / 6e-06 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04739 [flax] [poplar] AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain
Representative CDS sequence Show only first row Show all	>Lus10041287 pacid=23179762 polypeptide=Lus10041287 locus=Lus10041287.g ID=Lus10041287.BGIv1.0 annot-version=v1.0 ATGCCAATGGAAGGGAAGAAGGAGGCTGTGGTGCGGAGGAGGATGGATCCAATAATAAGGATTCGGCGTCGGTTATGCAGATACAGCGGCCTCCGCCGCC GCCCCCCACGCATCCCGGCGGACCCCCCGCCGACGAATCCAGCTGGCCCTGTGCAGCCAATCAATAATAACAGCACTCCGCCTCATAGCCCAGCTCGATC CTCCTCGCCTCGCTTGTTTGCTCCTCAGGTTCCTGTAGCTCCAATACAAAGGCCTGATGGTTTCCCTCTTCAAGTGTGGCCAAACGAGCCTCAACCCGTT GTGGATCAATCTTCTTCTGTTAAGGGTATCCCCACAGTTATCATTTGGACCTATGGTGGTAAGGAGGTAGCTGTGGAGGGATCGTGGGACAATTGGCAGT CAAGGAAGTTGATGCAAAGATCAGGGAAGGATCATTCGATTCTTCTCGTTCTTCCATTGGGGATATACCACTATAAGTTCATTGTCGATGGCGAGTGGAG ATATACTCCGGACCTCCCTTTTGTAGCCGATGAAATGGGCGGTGTTTGTAATATCCTTGATGTTAATGTATCCTGTGTTCTGATCCTCTCATCCTCGCAG GATTATGTACCAGAAAACCCGGATAGTGTGTCAGAGTTTGAAGCCCCGGCATCACCTGACTCGAGTTATGCTAATATGTTACCATCTGAAGAAGATTTCG CAAAGGAGCCAGTAGTTGTTCCACCGCAGCTTCATCTTACCGTACTTGGCATGGAGAACTCAGGTGAACCGCCTGCTTCATCTTCCCCTCCTTCAAAGCC TCAGCATGTTGTGCTTAACCACCTCTTTATCGAAAAAGGATGGGCTTCTCAGTCACTGGTCGGTCTCGGGCTGACTCACCGGTTCGAATCCAAATATGTC ACTGTTGTCCTTTATAAGCCACTGAAACGGTAG
AA sequence Show only first row Show all	>Lus10041287 pacid=23179762 polypeptide=Lus10041287 locus=Lus10041287.g ID=Lus10041287.BGIv1.0 annot-version=v1.0 MPMEGKKEAVVRRRMDPIIRIRRRLCRYSGLRRRPPRIPADPPPTNPAGPVQPINNNSTPPHSPARSSSPRLFAPQVPVAPIQRPDGFPLQVWPNEPQPV VDQSSSVKGIPTVIIWTYGGKEVAVEGSWDNWQSRKLMQRSGKDHSILLVLPLGIYHYKFIVDGEWRYTPDLPFVADEMGGVCNILDVNVSCVLILSSSQ DYVPENPDSVSEFEAPASPDSSYANMLPSEEDFAKEPVVVPPQLHLTVLGMENSGEPPASSSPPSKPQHVVLNHLFIEKGWASQSLVGLGLTHRFESKYV TVVLYKPLKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	0	1
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	1.4	0.9221
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	2.0	0.8973
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	3.0	0.8759
AT4G08570			Heavy metal transport/detoxifi...		Lus10039419 [exp]	4.2	0.8989
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	5.3	0.8697
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	5.5	0.8734
AT5G04980			DNAse I-like superfamily prote...		Lus10034857 [exp]	5.6	0.8250
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	7.2	0.9045
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	7.9	0.8830
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	8.5	0.8713

Compare expression of checked genes

Lus10041287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.