Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65950 1362 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037422 [exp] 2060 / 0 AT5G65950 1312 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144700 [exp] 1636 / 0 AT5G65950 1512 / 0.0 unknown protein Potri.001G457201 [exp] 841 / 0 AT5G65950 744 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0212 [flax] [poplar] SNARE PF07919 [flax] [poplar] Gryzun Gryzun, putative trafficking through Golgi CL0020 [flax] [poplar] TPR PF11817 [flax] [poplar] Foie-gras_1 Foie gras liver health family 1
Representative CDS sequence Show only first row Show all	>Lus10041289 pacid=23179974 polypeptide=Lus10041289 locus=Lus10041289.g ID=Lus10041289.BGIv1.0 annot-version=v1.0 ATGGAGGAGTATCCGGAGGAGTTACGGACGCCGCCGGTAAGTCTGATATCGCTAGTCGGATGCCCTGAGCTCCACGCGCTCATCTCCTCTCACCTCCACT CCGAACAGCCTCCCATCAACACTCTTGCCTTGCCGGACTTCTCTAAGATCTCCGTGATCTTCTCCGGCAAAAGTTCCGATGCCAAAACACCACCTTCATC CACCGATCCCAGCTCTGTCCCTCCCGGCATTCTGAAGAGAGACTGGTTGCTCAAGCATCGCACTAAGGTTCCCGCTGTCCTCGTCGCTCTTTTTACTTCG GAACAGATCTCTGGCGATCCAGCTCAGTGGCTTCAGGTCCGGAACAGATCTCGGGCGATCCAGCTCAGTGGCTTCAGAAATGTGATGCGTCCCAAGAACA TCAAGCTTGTGGTTGTTGTTGTTGTGCCCCCGTCGTTTTATTCCTCTTCCGGTGATGAAATTATCAGCGAAGATAGAATGGCTGCTCTTCGCAAACGAGC TGAATTGGATGCTAAGCAAGTTGTATTTTTCAACTCCGGTGATGAATTACAACTTAAGGAATCCCTTAACAAGCTAGCAAGTACTTTAGCTGAATTAGCA GCTACATATTATAGAGAAGAAGGACGTAGGATCAAGGCTCGTGTGGAGAAGAAGAACATCAATGCTATTCAGTTGAATATTCGTAGTTGTTTTAAGGTTG CTGTCTATGCGGAGTTTAGGAGAGATTGGGCAGAAGCTTTGAGGTTTTATGAGGATGCATACCATATGCTGCGGCAGATGGTTTCAACAGCAAATAGCTT ACCTGTTATTCAACGGTTGGTTGAGATAAAAATTGTTGCAGAGCAGTTGCATTTCAAAATATCAACTTTGTTACTTCACGGTGGGAAGATAGCTGATGCA ATTTCATGGTTCCGCAAGCATAACACTTCTTACAGGAATCTAGTAGGTCCTCCAGTAGCTATTTTTATGCATTGGGAGTGGATGAGCCGACAGTTTCTTG TATTTGCTGAATTGCTTGAGACCAGCTCAAAGGCCATCCAGAGTATTTCTGGTCCTGCTTTAAATAGCGCAGAGAAAATTTTGACAGAGTGGGAATTTCA ACCAGCATATTACTATCAGTTAGCCGCTCACTACCTCAAGGAGAAGAGAAATGCATTGGAACTTGCACAGCCAAGTTCTGGTGCAGCTGATGGCAGTGCT GAATCTGTAGCACCTTCAGTTTATGTTGGACAGTTTGCTAGGCTGCTCGAGCTAGAGAATGCATTAGATATGCAACCTCTTACTGATGAAGAATATATCC TCTACGCTATTGCAGAAGGGAAAAGGTTCCAAGACTCCTTTGAAATTATTGCTCTTCTTAAACGATCTCATGAATCATTCTCCAGTATCAAGGCCACGAG AATGGGTTCTCATTGTGCATTCCAGATGGCTAAGGAATATTACGTTGTTGGAGACTTCACTAATGCAAAACCGTTACTTGATGGTGTTGCAAGTCTGTAC AGATCGGAAGGATGGGTGACTTTATTGTGGGAAGTTTTGGGTTATCTAAGGGAGTGTTCTAGAAAAGCTGGTATCGTAAAAGAATTTGTAGAGTACTCTC TTGAAATGGCTGCACTGCCTGTATCTGATACAAGTGAACAATCTGTTGGTTCTAAAGATTGTGGCCCTGCTGGTCCTACCAGTCTTGCTCAACGAGAAAA TATACACAAGGAGGTTTTCTCTCTTGTCAGCAGAGAAGGAGGATCAGTGTCAGTCGATAAAAATAGTGATCTTCACCCTGCTTTGAATGGTCCTTTGCAT CTTGAGATAGATCTTGTCAGCCCCCTTCGAGTTGTCCTGCTTGCCTCTGTTGCTTTTCATGAACAGATAATTAAACCTGGCGTGCCTGCCTTAATTACAG TATCACTTCTGTCCCAGTTACCTATGAATGTTGAGATTGATCAATTGGAATTTCAGTTCAATCAATCGGAGTGTAACTTTGTCATCATTAATTCTGAAAG ACCTGCATCTGATGGACAACGAGGTCGACGGGTTGAAACTGCTCCTTCTCTGACACTTATTACAAACAAGTGGCTACGCTTGACCTATGATGTCCAATCA GAAATGAGTGGCAAGCTGGAATGCATATATGTTATTGCAAAAATGAGATCCCACCTAACAATCTGCTGTAGAGCTGAAAGTCCTGCTTCAATGGATGATT TACCTCTTTGGAGATTTGAAGACCGTGTTCAGACTTTTCCAACGAAGGATCCTGCTCTTGCATTTTCAGGCCAAAAGGCTGCCCAGGTTGAGGAACAAGA CCCTCAAGTGGATCTTGTTCTTGGTGCTACAGGACCTGCACTGGTTGAAGAGTGCTTCATTGTTCCTGTTACTGTTACATCCAAGGGCCACTCGGTGTTT TCGGGTGAGTTGAAGATCAATTTGGTTGATGTTAAAGGTGGCGGCTTATTTAGTCCCAGGGAAGTGGAGCCGCTTGCCTCGGAGAGTCATCACGTCCAGC TTCTCGGTGTCACTACGCCAGAGACAGAGGATGATCCTCAAGTAGCTTCCAGTAAAATCAAGAAAATTCAACAGTCTTTCGGCTTGGTCTCTGTCCCATT TTTGAAAGACGGAGAAACATGGTCCTGCAAACTGGAAATCAGGTGGAACCGACCTAAACCGATCATGCTATTCGTTTCACTCGGATATTTTCGCGATGTC AATGAATCGAGTTCGCAGAAAGCTCACGTCCACAAAAGCCTGCAGATTGAAGGAAAGACTGGTATCGTGATCAACCATCACCTTATGTTGCCGTTCCACA ACGATCCACTATTGCTTTCAAGGATCAAGCCCAGCCCAGACTCAAAACAGCTCCCTTCACTGCCCATGAACGAAACGACTGTTCTTGTTGTCAGTGCTAA GAACTGCTGTGAAGTGCCATTGCAATTACAATCTGTCTCTATCGATATGGATGATGATTGTGAAAGGCTGTACAAACTACAACACGGAGGTGGTGAAGAT CTTTTAAAGATTCCCCACCTTATGCCTGGAGAAGAGTTGAGAAAGGTCTTCACCATCATTCCTGAGGTGAAATCTTCGAGTCTTGTCTTAGGATCAGTGT GCGTAAGATGGAGAAGGAAATCAGAGGCAGAAGATACAGAAGCTTGCATCTTGACTAAATCCAAACTTCCTGAAGTCAACGTGGAGCTTCCACCGTTGGT GGTGAAGCAAGAATGGCCTCCTTACGCGATTCTCGGGGATCCTTTTGCTTACATTATCAGCATCAAGAACCAGACCCAGCTGCTACAAGAGGTCAAGTTC TCGTTAGCAGACGCTCAGAATTTCGTGCTATCCGGATCCCATACCGACACTGTTTTCATCCTCCCAAGGTCTGAACGCGTTGTTTCGTACAAGATCGTGC CGCTGTGTTCTGGTATGCAACAGCTGCCTCGGGTGACTGCGACTTCAGTTAGATATTCAGCTGCATTTCAACCGTTGGTCGCTGCTTCTATGGTTTTTGT GTTCCCTTCCAAGCCTCACTTCCAGATATGTGGAAGTTAA
AA sequence Show only first row Show all	>Lus10041289 pacid=23179974 polypeptide=Lus10041289 locus=Lus10041289.g ID=Lus10041289.BGIv1.0 annot-version=v1.0 MEEYPEELRTPPVSLISLVGCPELHALISSHLHSEQPPINTLALPDFSKISVIFSGKSSDAKTPPSSTDPSSVPPGILKRDWLLKHRTKVPAVLVALFTS EQISGDPAQWLQVRNRSRAIQLSGFRNVMRPKNIKLVVVVVVPPSFYSSSGDEIISEDRMAALRKRAELDAKQVVFFNSGDELQLKESLNKLASTLAELA ATYYREEGRRIKARVEKKNINAIQLNIRSCFKVAVYAEFRRDWAEALRFYEDAYHMLRQMVSTANSLPVIQRLVEIKIVAEQLHFKISTLLLHGGKIADA ISWFRKHNTSYRNLVGPPVAIFMHWEWMSRQFLVFAELLETSSKAIQSISGPALNSAEKILTEWEFQPAYYYQLAAHYLKEKRNALELAQPSSGAADGSA ESVAPSVYVGQFARLLELENALDMQPLTDEEYILYAIAEGKRFQDSFEIIALLKRSHESFSSIKATRMGSHCAFQMAKEYYVVGDFTNAKPLLDGVASLY RSEGWVTLLWEVLGYLRECSRKAGIVKEFVEYSLEMAALPVSDTSEQSVGSKDCGPAGPTSLAQRENIHKEVFSLVSREGGSVSVDKNSDLHPALNGPLH LEIDLVSPLRVVLLASVAFHEQIIKPGVPALITVSLLSQLPMNVEIDQLEFQFNQSECNFVIINSERPASDGQRGRRVETAPSLTLITNKWLRLTYDVQS EMSGKLECIYVIAKMRSHLTICCRAESPASMDDLPLWRFEDRVQTFPTKDPALAFSGQKAAQVEEQDPQVDLVLGATGPALVEECFIVPVTVTSKGHSVF SGELKINLVDVKGGGLFSPREVEPLASESHHVQLLGVTTPETEDDPQVASSKIKKIQQSFGLVSVPFLKDGETWSCKLEIRWNRPKPIMLFVSLGYFRDV NESSSQKAHVHKSLQIEGKTGIVINHHLMLPFHNDPLLLSRIKPSPDSKQLPSLPMNETTVLVVSAKNCCEVPLQLQSVSIDMDDDCERLYKLQHGGGED LLKIPHLMPGEELRKVFTIIPEVKSSSLVLGSVCVRWRRKSEAEDTEACILTKSKLPEVNVELPPLVVKQEWPPYAILGDPFAYIISIKNQTQLLQEVKF SLADAQNFVLSGSHTDTVFILPRSERVVSYKIVPLCSGMQQLPRVTATSVRYSAAFQPLVAASMVFVFPSKPHFQICGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65950			unknown protein		Lus10041289 [exp]	0	1
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10016706 [exp]	3.7	0.8922
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10039983 [exp]	3.9	0.8926
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	4.6	0.8980
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	5.1	0.9079
AT5G38690			Zinc-finger domain of monoamin...		Lus10033539 [exp]	6.0	0.8925
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	9.5	0.8544
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	11.0	0.8940
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	13.5	0.9039
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	14.4	0.8774
AT1G51350			ARM repeat superfamily protein...		Lus10027364 [exp]	15.9	0.8644

Compare expression of checked genes

Lus10041289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.