Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44360 318 / 2e-103 FAD-binding Berberine family protein (.1) AT1G30760 316 / 1e-102 FAD-binding Berberine family protein (.1) AT4G20820 315 / 2e-102 FAD-binding Berberine family protein (.1) AT4G20860 307 / 3e-99 FAD-binding Berberine family protein (.1) AT2G34790 301 / 5e-97 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30700 300 / 2e-96 FAD-binding Berberine family protein (.1) AT1G30710 300 / 2e-96 FAD-binding Berberine family protein (.1) AT1G34575 292 / 2e-93 FAD-binding Berberine family protein (.1) AT2G34810 292 / 2e-93 FAD-binding Berberine family protein (.1) AT1G26400 288 / 4e-92 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038446 [exp] 431 / 2e-147 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10026290 [exp] 388 / 1e-130 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 324 / 5e-106 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10032943 [exp] 319 / 1e-103 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 304 / 2e-97 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 299 / 3e-96 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 297 / 2e-95 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10023374 [exp] 296 / 2e-95 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 297 / 3e-95 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161800 [exp] 405 / 2e-137 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 348 / 4e-115 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 338 / 2e-111 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158600 [exp] 338 / 4e-111 AT1G30760 499 / 5e-173 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 337 / 5e-111 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 336 / 2e-110 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 335 / 6e-110 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 333 / 2e-109 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 331 / 1e-108 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 330 / 3e-108 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10041290 pacid=23179725 polypeptide=Lus10041290 locus=Lus10041290.g ID=Lus10041290.BGIv1.0 annot-version=v1.0 ATGGAAAAGCAGCTCTTAGTCCTCCTCCTCTCATCTCTCGCTCTGATCATCTCCGCCAGTCCAACATCTCCACCTCGTGACAAGTTCATCAAATGCATGA CGACGACGACAACCACCAAATCCAACCTCGGCCACCCGACAACATCACCGTTCCCAACCATATTCACCCCTGACTCGTCTCTCTTCGACTCAACCATGGA CTCCAAAGTCCAAAACATGCGATACGCGAACTCCACCACAACCCCCATCCTCATCTTGACCCCAACCGACGAGGCCGAAATCCAAGCAGCAGTAATCTGC TGCCGGAACCAACATCTCGAAATCAGAGTCCGCAGCGGGGGCCATGACTACGAAGGAATATCGTACCTCAGCAGCACGGGGAGACCATACATCATTGTCG ACCTCTTCAATCTTAACTCCGTACAGGTGGACGTCCACGCTGAGTCAGCGTGGGTCCAGACGGGTGCACAGCTCGGAGAGCTGTACTACGCAATTGCCAA GAAAGCCTCCCACCTGGCATTCCCTGCGGGGGTGTGTCCCACGGTGGGAGTCGGGGGCCACCTCGGCGGTGGTGGGTTTGGTACCTTGGTGAGGAAGTAT GGTCTTGCGGCGGATAATGTGGTGGATGCTTATATAGTTGATTATCGAGGGAGGGTTATGGATAGGAAGGCCATGGGGGAGGATGTGTTCTGGGCGATCC GAGGCGGTGGAGCTGCAAGCTTCGGCGTTGTGCTGTCGTGGAAGGTGAAACTAGTTCGAGTTCCTCACACGGTAACATTCTTCACGGTTTCCAGAACGGT GGAGGAAGGAGCAACGAAGCTAGTCCACAAATGGCAACGATTCGCACACGACGCAGACGACGATTTGTTCATCAGAGTTCTGATCCTGAACGTGAACAAG ACAACTAAAGTGAGCTTCCAGTCACTATTTCTAGGAACAGTTAACAAACTGATCCCTCTAATGAACAAAACCTTCCCCCAATTGATGCTAACAGCAGAGA ACTGCACAGAGGGAAGTTGGGCAGATTCAGCCCTCCATTTCTGGGGACTCAATCCGAAAAGTCCGATCGAAGTCTTGCTCGACAAAACCCAACTATACAA GGCCAAATTCAAGGCGAAATCTGACTTCGTCAAGGAGCCCATACCGGAATCGGGGCTTAGAGGGATATGGAAGCTGTTGCGAGAGGAGGTCGAGCCGGTG GTCGTGCTGGAGCCTCTGGGTGGGAGGATGAAAGGAGATTCCGGAATCTCACATTCCGTTCCCACACAGGAAAGGGAATCTGTACAACGCGCAGTATCTT GTGAAGTGGGTCGACGGCGGGGCAGAGGAAGAGAAGAGGCACTTGGAATGGATGAATAA
AA sequence Show only first row Show all	>Lus10041290 pacid=23179725 polypeptide=Lus10041290 locus=Lus10041290.g ID=Lus10041290.BGIv1.0 annot-version=v1.0 MEKQLLVLLLSSLALIISASPTSPPRDKFIKCMTTTTTTKSNLGHPTTSPFPTIFTPDSSLFDSTMDSKVQNMRYANSTTTPILILTPTDEAEIQAAVIC CRNQHLEIRVRSGGHDYEGISYLSSTGRPYIIVDLFNLNSVQVDVHAESAWVQTGAQLGELYYAIAKKASHLAFPAGVCPTVGVGGHLGGGGFGTLVRKY GLAADNVVDAYIVDYRGRVMDRKAMGEDVFWAIRGGGAASFGVVLSWKVKLVRVPHTVTFFTVSRTVEEGATKLVHKWQRFAHDADDDLFIRVLILNVNK TTKVSFQSLFLGTVNKLIPLMNKTFPQLMLTAENCTEGSWADSALHFWGLNPKSPIEVLLDKTQLYKAKFKAKSDFVKEPIPESGLRGIWKLLREEVEPV VVLEPLGGRMKGDSGISHSVPTQERESVQRAVSCEVGRRRGRGREEALGMDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	1.7	0.7989
					Lus10027052 [exp]	3.5	0.7614
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	8.9	0.7776
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	14.0	0.7367
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	16.0	0.7004
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10037792 [exp]	18.7	0.7195
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10013323 [exp]	20.8	0.6969
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020131 [exp]	22.0	0.6780
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	22.6	0.7178
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10026054 [exp]	29.1	0.7189

Compare expression of checked genes

Lus10041290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.