Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27690 432 / 5e-153 VPS26B vacuolar protein sorting 26B (.1.2) AT5G53530 279 / 2e-92 VPS26A vacuolar protein sorting 26A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037421 [exp] 318 / 2e-107 AT5G53530 508 / 0.0 vacuolar protein sorting 26A (.1) Lus10008868 [exp] 286 / 2e-95 AT5G53530 503 / 0.0 vacuolar protein sorting 26A (.1) Lus10023242 [exp] 283 / 1e-91 AT5G53530 538 / 0.0 vacuolar protein sorting 26A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081300 [exp] 491 / 9e-176 AT4G27690 566 / 0.0 vacuolar protein sorting 26B (.1.2) Potri.001G222500 [exp] 290 / 1e-96 AT5G53530 523 / 0.0 vacuolar protein sorting 26A (.1) Potri.018G150900 [exp] 286 / 3e-95 AT4G27690 542 / 0.0 vacuolar protein sorting 26B (.1.2) Potri.009G021200 [exp] 286 / 4e-95 AT5G53530 519 / 0.0 vacuolar protein sorting 26A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0135 [flax] [poplar] Arrestin_N-like PF03643 [flax] [poplar] Vps26 Vacuolar protein sorting-associated protein 26
Representative CDS sequence Show only first row Show all	>Lus10041291 pacid=23179792 polypeptide=Lus10041291 locus=Lus10041291.g ID=Lus10041291.BGIv1.0 annot-version=v1.0 ATGCTGGTGGGTGGGTTCTCCACTATTCAGAATTTCCTCATTGGAGCTTTCAAGCCACCCTGCAACATTTCAATAGTTTTTGTTGATAGAAGAAGCCGCA AGCAGGTTCCGCTAAAGAAGGAAAATGGTCAGATAGCTACAGTTCCTCTCTATCAGAGTCAAGAAAACATTGCTGGAGAGGTTGTTGTAGAACCTACACA AGGGAAGAAGGTTGAACACAATGGGATAAAAATTGAGTTGCTTGGCCAGATAGAACTGTATTTTGACCGTGGAAACTTCTATGATTTTACTTCCCTTGTG CGTGAACTTGATGTACCTGGTGACTTGTATGAAAAGAAATCGTATCCCTTTGAGTTTTCAACTGTTGAAATGCCGCATGAGTCCTACAGTGGAGTCAATG TGAGGCTCAGGTATATATTGAGGGTGACGATCAGTCGGAATTATGTTAACAACATTGTCGAGCACCAGGATTTTGTGGTAAGTAATTATACATCACTAAG CAGTGCAGTGAATAAGCTGATAGATAATTTAGGGTACTGCCACTCATTGTTTCCAGTTAGAAGTTTACACTGTGATAGACATAAACCTGATAGCCGTGAT AACTGTACTCCCGTAATTGCTGTTGAACCATCTCCCATGAAAGCTGTTAAGAGTGATCGTGTGCGGAATTACACTCCCCAACCACCAGTTAACAACAGCA TCAAGATGGAAGTTGGAATCGAGGACTGTCTTCATATAGAATTTGAATACAATAAAAGCAAGTACCATCTGAAGGATGTAATCATTGGGAAAATTTATTT CCTCTTGGTAAGAATTAAAATCAAGAATATGGAGCTTGAGATTCGACGTCGTGAATCAACAGGATCGGGGCCTAACACGTATGTTGAGACAGAGACACTT GCAAAATACGAGTTGATGGATGGTGCCCCTGTAAGAGGAGAATCTATTCCGGTCAGGCTATTCCTAAGTCCGTATGAGCTGACACCTACATACCGAAACA TCAACAACAAGTTCAGCGTGAAGTATTACTTGAATCTCGTCCTAGTAGACGAAGAAGATCGGCGATATTTTAAACAGCAGGAAATCACGGTATATCGGCT CCTGGAGACTTCTTGA
AA sequence Show only first row Show all	>Lus10041291 pacid=23179792 polypeptide=Lus10041291 locus=Lus10041291.g ID=Lus10041291.BGIv1.0 annot-version=v1.0 MLVGGFSTIQNFLIGAFKPPCNISIVFVDRRSRKQVPLKKENGQIATVPLYQSQENIAGEVVVEPTQGKKVEHNGIKIELLGQIELYFDRGNFYDFTSLV RELDVPGDLYEKKSYPFEFSTVEMPHESYSGVNVRLRYILRVTISRNYVNNIVEHQDFVVSNYTSLSSAVNKLIDNLGYCHSLFPVRSLHCDRHKPDSRD NCTPVIAVEPSPMKAVKSDRVRNYTPQPPVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL AKYELMDGAPVRGESIPVRLFLSPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITVYRLLETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10041291 [exp]	0	1
AT5G18940			Mo25 family protein (.1.2)		Lus10034014 [exp]	1.4	0.8388
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	1.7	0.8325
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	2.2	0.8415
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10041158 [exp]	4.5	0.8174
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10025176 [exp]	8.0	0.8216
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	16.4	0.8094
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	18.2	0.7312
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	22.5	0.7545
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	29.5	0.7503
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	32.3	0.7721

Compare expression of checked genes

Lus10041291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.