Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26970 300 / 3e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037420 [exp] 480 / 4e-175 AT2G26970 297 / 6e-103 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G222300 [exp] 298 / 2e-102 AT2G26970 301 / 9e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10041292 pacid=23179896 polypeptide=Lus10041292 locus=Lus10041292.g ID=Lus10041292.BGIv1.0 annot-version=v1.0 ATGGAGCGCCTCGCCAATGCATTCTCGGTTCTGGACCTAGACGTCGAGGACGACCAACCATCCACCGCCCCTTCTTCCTCCACCTCAGGAAAGGGGAAGA AGGCAGTGAAGAATGACAAACCAATTCAGGAAGAAAGCGTGGCTTCTTCTGGGCCGTACACTATGCCCCTTGTGTGGATTGACCTCGAGATGACTGGTCT GGATGTTGAAGCCGATAGAATAATTGAGATTGCCTGTATAATTACTGATGGAAAGCTCACCAAATTAGTAGAGGGTCCCGAGTTGGTTATTCATCAAAGT GAAGAGTGTATGAATAAGATGGGAGAATGGTGTCAGGCTCATCATGGTGCTAGTGGACTGACAGAGAGAGTTATCCAGAGTACCATTAGTGAAAGAGAAG CTGAATTACAGGTTATAGAGTTTATTAAGAAGCATGTTGGTACATATACGCCACAAATAGCTGGCAATTCTGTCTACATGGATTTGCTATTCATAAGGAA ATATATGCCAGAGTTGGCTAGCCTCTTCAGTCATGTTATTGTTGACGTTAGTAGCGTTAGATCTCTGTGCATACGCTGGTATCGCAAAGATCACGAGAGA GCCCCTGCCAAGGCGAATAAGCATAGAGCCCTAGATGATATCAAAGAAAGCATCAATGAACTCAAGTACTACAAACAGAGCATATTCAAGGCCAAGAAGT CCAAATAA
AA sequence Show only first row Show all	>Lus10041292 pacid=23179896 polypeptide=Lus10041292 locus=Lus10041292.g ID=Lus10041292.BGIv1.0 annot-version=v1.0 MERLANAFSVLDLDVEDDQPSTAPSSSTSGKGKKAVKNDKPIQEESVASSGPYTMPLVWIDLEMTGLDVEADRIIEIACIITDGKLTKLVEGPELVIHQS EECMNKMGEWCQAHHGASGLTERVIQSTISEREAELQVIEFIKKHVGTYTPQIAGNSVYMDLLFIRKYMPELASLFSHVIVDVSSVRSLCIRWYRKDHER APAKANKHRALDDIKESINELKYYKQSIFKAKKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26970			Polynucleotidyl transferase, r...		Lus10041292 [exp]	0	1
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	1.0	0.8927
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10010283 [exp]	2.0	0.8383
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	5.2	0.8248
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10035703 [exp]	12.0	0.7735
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	12.8	0.7890
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	13.7	0.7873
AT1G71790			Subunits of heterodimeric acti...		Lus10007185 [exp]	15.2	0.7275
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	16.5	0.8208
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	17.2	0.8215
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10016372 [exp]	19.9	0.7716

Compare expression of checked genes

Lus10041292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.