Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70170 94 / 1e-22 MMP matrix metalloproteinase (.1) AT1G59970 92 / 6e-22 Matrixin family protein (.1) AT1G24140 92 / 7e-22 Matrixin family protein (.1) AT4G16640 87 / 3e-20 Matrixin family protein (.1) AT2G45040 71 / 3e-14 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037419 [exp] 319 / 1e-110 AT4G16640 157 / 2e-45 Matrixin family protein (.1) Lus10041294 [exp] 223 / 1e-72 AT1G59970 177 / 3e-53 Matrixin family protein (.1) Lus10037418 [exp] 109 / 3e-29 AT1G59970 124 / 1e-33 Matrixin family protein (.1) Lus10032175 [exp] 89 / 9e-21 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10014512 [exp] 87 / 2e-20 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10005605 [exp] 85 / 1e-19 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10030662 [exp] 85 / 3e-19 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10039464 [exp] 82 / 1e-18 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10004728 [exp] 82 / 5e-18 AT4G16640 350 / 2e-119 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027700 [exp] 119 / 2e-32 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.008G027975 [exp] 113 / 3e-30 AT1G59970 216 / 4e-68 Matrixin family protein (.1) Potri.008G027500 [exp] 113 / 4e-30 AT1G59970 219 / 2e-69 Matrixin family protein (.1) Potri.008G027600 [exp] 100 / 2e-25 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.008G027900 [exp] 97 / 5e-24 AT1G59970 192 / 9e-59 Matrixin family protein (.1) Potri.015G103900 [exp] 96 / 3e-23 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.012G104600 [exp] 94 / 2e-22 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G033200 [exp] 92 / 5e-22 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.013G100400 [exp] 91 / 9e-22 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.001G157500 [exp] 84 / 4e-19 AT2G45040 349 / 2e-119 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10041293 pacid=23179852 polypeptide=Lus10041293 locus=Lus10041293.g ID=Lus10041293.BGIv1.0 annot-version=v1.0 ATGATCTTATGTTCAGGTATTCGGTCAGGCCAGCACCGGAGCTCCAGCAACGGAACCGGTCAATCCTCCTACAAATTCTTTGAAGGGAATCCGAAATGGG GTTGTAGTGAATTGTTTTTCCGGTACGAAGTAAACGACGAGCTACCTTCCCACATCGACTACGAAGCGGCGATATTCAGGGCATTCCAGAGGTGGGAAGC GGTATGCCCTGCTTTCAACTTCCGGCGAGTGGCAGACTACGACATGCCGGTACCGGGAGTGTTGAAATGCCGTAGAGGAGGACTTCCACATTGGGTGGTA CTCGGGGGACCACGGGGATGGGCAGCCGTTTGGGGGAGAGGAGCACAGCTTGCGCACGCGTCTCCTCCCCCTTCGAACGCGGGGATGCATTTCGATGCGG ACGAGATATGGACAGCGACGGAAGGGTTTAACATGCTGGAGTTCGAAACAGATGTCGAATCGGTGGCCGTCCACGAGATCGGGCATATGCTAGGGCTGGA ACACACGGATGTTGAGGGAGGGATCATGTACCCGTACCTTGGTTATGGGATAGTTAAGAGGGTGATACAGAATGATGACATTCAAGGTCTTGCTCATCTC TACTCCTTTTGTAATCTTGTACAGAGGGATAAAGGACGATGA
AA sequence Show only first row Show all	>Lus10041293 pacid=23179852 polypeptide=Lus10041293 locus=Lus10041293.g ID=Lus10041293.BGIv1.0 annot-version=v1.0 MILCSGIRSGQHRSSSNGTGQSSYKFFEGNPKWGCSELFFRYEVNDELPSHIDYEAAIFRAFQRWEAVCPAFNFRRVADYDMPVPGVLKCRRGGLPHWVV LGGPRGWAAVWGRGAQLAHASPPPSNAGMHFDADEIWTATEGFNMLEFETDVESVAVHEIGHMLGLEHTDVEGGIMYPYLGYGIVKRVIQNDDIQGLAHL YSFCNLVQRDKGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10041293 [exp]	0	1
AT1G75580			SAUR-like auxin-responsive pro...		Lus10012432 [exp]	8.9	0.8786
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	11.0	0.8879
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	19.2	0.8851
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	21.3	0.8844
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	23.5	0.8827
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	24.7	0.8268
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	27.0	0.8816
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	28.7	0.8793
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	33.6	0.7909
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	36.4	0.8786

Compare expression of checked genes

Lus10041293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.