Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59970 177 / 3e-53 Matrixin family protein (.1) AT4G16640 164 / 3e-48 Matrixin family protein (.1) AT1G70170 165 / 4e-48 MMP matrix metalloproteinase (.1) AT2G45040 160 / 8e-47 Matrixin family protein (.1) AT1G24140 154 / 3e-44 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037419 [exp] 390 / 4e-137 AT4G16640 157 / 2e-45 Matrixin family protein (.1) Lus10037418 [exp] 338 / 7e-118 AT1G59970 124 / 1e-33 Matrixin family protein (.1) Lus10041293 [exp] 223 / 1e-72 AT1G70170 94 / 1e-22 matrix metalloproteinase (.1) Lus10028955 [exp] 169 / 1e-49 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10030662 [exp] 166 / 2e-48 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10014512 [exp] 163 / 3e-48 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10004728 [exp] 164 / 5e-48 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10032175 [exp] 160 / 7e-47 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10005605 [exp] 155 / 2e-45 AT1G24140 223 / 9e-71 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027600 [exp] 204 / 5e-64 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.008G027900 [exp] 192 / 2e-59 AT1G59970 192 / 9e-59 Matrixin family protein (.1) Potri.008G027700 [exp] 172 / 7e-52 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.015G103900 [exp] 173 / 2e-51 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.013G033200 [exp] 171 / 2e-51 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.008G027975 [exp] 171 / 4e-51 AT1G59970 216 / 4e-68 Matrixin family protein (.1) Potri.001G157500 [exp] 172 / 5e-51 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.008G027500 [exp] 169 / 2e-50 AT1G59970 219 / 2e-69 Matrixin family protein (.1) Potri.012G104600 [exp] 169 / 1e-49 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G100400 [exp] 166 / 2e-49 AT1G59970 247 / 4e-80 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10041294 pacid=23179927 polypeptide=Lus10041294 locus=Lus10041294.g ID=Lus10041294.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCAGTCATAATGCTTGCCGCCGTATTCCCTCTTCTTCATTTTCTTACTGTGATTCAAGCTGTCCAAGTTGTTGACCGAATGCATGTTAAAA AATACCTTCAACGGTATGGTTACCTCAATCAAGAAACAGAGGCTGAAGCTATAAGCAGTCGTATGCTCAAGTTTGGAATCAGACAGTATCAGCTCACCCA TGGCCTTCGGGTCACCGGACGCGTCAATAACGACACATTGAATCTAATGGCGACTCCCAGATGCGGTGTCACCGATCTCGGTATTCGGCCAACTCGACAC CAGAGTATCAAAAACAGAACCCGCCAGTCCGCCTACAACCTGTTCCCGGGGAATCCAAGATGGAGGCATCACCACTTGTTGTACCGGTACGAAGTAAACG ACGAGCTACCATCCCGTATCGACTATGAATCAGCGATGTACAGGGCATTCCGGCGGTGGGAAGCCGCCTGCCCTACTTTCAACTTCCGGCAAATGCCAGA TTACTACTTGCCGGAACCAGGATTCGAGGAGGAGGTAGATGAGGACATCCTCATTGGATGGTACTCGGGGGAGCACGGTGATTTGTTCCCATTCGACGGT AGAGGCAAAACGGTGGCCCACGCGTCTCCCCCGACAGCCGGGAAGCTGCATTTCGATGCTGACGAGACATGGACAGCGACGGAAAAGGTTGAGGTGCGGC CGTACGAAGTGGATCTGGAATCGGTGGCTGTTCATGAGATAGGGCATCTGCTAGGGCTGAGACACTCAGATGTAAGAGATGCCATAATGTATCCATATAC TGATTATGGCAATGTTAAGAGGGAGTTACATAGTGATGATATTCAAGGCCTTAAAGATCTCTACTCCTCCTTTTGTAATTTGGTAGAGAGTAATGGTGAT TGA
AA sequence Show only first row Show all	>Lus10041294 pacid=23179927 polypeptide=Lus10041294 locus=Lus10041294.g ID=Lus10041294.BGIv1.0 annot-version=v1.0 MAAAVIMLAAVFPLLHFLTVIQAVQVVDRMHVKKYLQRYGYLNQETEAEAISSRMLKFGIRQYQLTHGLRVTGRVNNDTLNLMATPRCGVTDLGIRPTRH QSIKNRTRQSAYNLFPGNPRWRHHHLLYRYEVNDELPSRIDYESAMYRAFRRWEAACPTFNFRQMPDYYLPEPGFEEEVDEDILIGWYSGEHGDLFPFDG RGKTVAHASPPTAGKLHFDADETWTATEKVEVRPYEVDLESVAVHEIGHLLGLRHSDVRDAIMYPYTDYGNVKRELHSDDIQGLKDLYSSFCNLVESNGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	0	1
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	6.5	0.7466
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10030013 [exp]	10.2	0.6905
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	10.3	0.7191
AT1G06980			unknown protein		Lus10009561 [exp]	10.5	0.6537
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	12.5	0.7088
AT5G05390		LAC12	laccase 12 (.1)		Lus10040957 [exp]	13.2	0.6627
					Lus10001565 [exp]	17.7	0.6033
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007117 [exp]	18.7	0.6745
AT1G10522			unknown protein		Lus10030652 [exp]	20.4	0.6328
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	22.8	0.6475

Compare expression of checked genes

Lus10041294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.