Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27020 430 / 4e-155 PAG1 20S proteasome alpha subunit G1 (.1) AT3G14290 117 / 5e-32 PAE2 20S proteasome alpha subunit E2 (.1) AT1G53850 117 / 5e-32 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT1G47250 117 / 6e-32 PAF2 20S proteasome alpha subunit F2 (.1) AT5G42790 117 / 8e-32 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) AT3G22110 114 / 9e-31 PAC1 20S proteasome alpha subunit C1 (.1) AT1G16470 113 / 2e-30 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 112 / 2e-30 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G35590 105 / 2e-27 PAA1 proteasome alpha subunit A1 (.1) AT2G05840 102 / 2e-26 PAA2 20S proteasome subunit PAA2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037416 [exp] 456 / 3e-165 AT2G27020 478 / 1e-173 20S proteasome alpha subunit G1 (.1) Lus10024269 [exp] 115 / 4e-31 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10007396 [exp] 115 / 5e-31 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10037454 [exp] 117 / 8e-30 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 116 / 1e-29 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10042145 [exp] 110 / 2e-29 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10017135 [exp] 110 / 3e-29 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10004235 [exp] 108 / 3e-29 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10036210 [exp] 107 / 2e-28 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020800 [exp] 442 / 9e-160 AT2G27020 453 / 5e-164 20S proteasome alpha subunit G1 (.1) Potri.001G224100 [exp] 441 / 3e-159 AT2G27020 457 / 3e-165 20S proteasome alpha subunit G1 (.1) Potri.005G229200 [exp] 116 / 3e-31 AT5G42790 455 / 9e-164 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.002G033900 [exp] 115 / 3e-31 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.001G162900 [exp] 114 / 5e-31 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.016G015400 [exp] 114 / 1e-30 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.006G008800 [exp] 113 / 2e-30 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.015G122400 [exp] 112 / 5e-30 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.012G123550 [exp] 112 / 5e-30 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.003G072500 [exp] 111 / 6e-30 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10041296 pacid=23179530 polypeptide=Lus10041296 locus=Lus10041296.g ID=Lus10041296.BGIv1.0 annot-version=v1.0 ATGAGCAGCATCGGTACTGGTTACGATCTCTCCGTGACCACTTTCTCCCCCGATGGACGCGTATTCCAGATTGAGTACGCCGCTAAGGCCGTCGACAACA GCGGGACTGTTGTGGGGATCAAGTGCAAAGATGGAATTGTCATGAAGCTCATAGCTTCCAAGATGATGCTTCCCGGTTCCAATAGGAGGATACATTCAGT TCATCGGCACTCTGGGATGGCTGTGGCTGGCTTAGCTGCTGACGGTAGACAAATTGTTGCACGAGCAAAGTCTGAGGCAGCTAACTATGACAATGTTTAC GGTGAACCTATCCCTGTGAAAGAACTTGCAGATCGTGTTGCTAGCTATGTTCATTTGTGTACCCTCTATTGGTGGCTGAGGCCCTTTGGTTGTGGTGTTA TTCTTGGTGGTTATGACAGAGATGGACCACAGTTGTACATGATTGAACCATCTGGTATCTCCTATATTTCATTGGCTCTTGAAATTGAGAAGTTAAAGCT ATCGGAAATGACATGCCGTGAAGGAATTCTTGAAGTTGCCAAAATCATTTACAAGGTACATGATGAAGCAAAGGATAAGGCCTTCGAATTGGAACTGAGC TGGGTTTGTGAAGAGTCAAAGAGACAACATCAGAAGGTTCCTGAAGAACTATTGGAGGAGGCCAAGTCTGCTGCTAGGACCGCACTCGAAGAAATGGATG CTGATTAG
AA sequence Show only first row Show all	>Lus10041296 pacid=23179530 polypeptide=Lus10041296 locus=Lus10041296.g ID=Lus10041296.BGIv1.0 annot-version=v1.0 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEAANYDNVY GEPIPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYISLALEIEKLKLSEMTCREGILEVAKIIYKVHDEAKDKAFELELS WVCEESKRQHQKVPEELLEEAKSAARTALEEMDAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	0	1
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	1.0	0.8888
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	1.4	0.8595
AT1G16000			unknown protein		Lus10011478 [exp]	2.4	0.8095
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	4.0	0.8018
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	5.7	0.7613
AT5G45190			Cyclin family protein (.1.2)		Lus10040640 [exp]	7.9	0.7495
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	8.4	0.7719
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10021932 [exp]	9.2	0.7383
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	10.4	0.7739
AT4G33740			unknown protein		Lus10012453 [exp]	11.2	0.7830

Compare expression of checked genes

Lus10041296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.