Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09310 187 / 2e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037415 [exp] 235 / 5e-81 AT5G09310 190 / 3e-63 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063100 [exp] 213 / 2e-72 AT5G09310 189 / 7e-63 unknown protein Potri.007G106200 [exp] 108 / 7e-32 AT5G09310 104 / 2e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10251 [flax] [poplar] PEN-2 Presenilin enhancer-2 subunit of gamma secretase
Representative CDS sequence Show only first row Show all	>Lus10041297 pacid=23179724 polypeptide=Lus10041297 locus=Lus10041297.g ID=Lus10041297.BGIv1.0 annot-version=v1.0 ATGGAACCCTCACACCCTAACTCCTCTGTGTCCTCTTCTTCCACCACAAATCCCACACCGATCCCCAACTCCATACTCGCGTCGGTGCCTGTGTGGCCCA CCATCGACGGTCCACTAGGTCTGACGGAGGATGAATCGTTGACCTACGCCCGTCGCTTCTACGGCTTCGGCTACGCCCTCCTTCCGTGGCTTTGGGCAGT GAATTGCTTCTACTTCTGGCCCGTCCTCCGCCATTCCCGCTCTTTCCCCCTCATTCGCCCCTATGTTATGAAGTCGGCTATTGGATTCTGGGTATTCACA AGTGTCCTCTGTTCGTGGGCATTCACATTTGCCATCGGCGGGGAGCAGCTGTTCGGCCCTGTCTGGGATAAACTAGTGATGTATAATCTTGCTGATAGGT TAGGGTTGACAGGTTGGATCTAG
AA sequence Show only first row Show all	>Lus10041297 pacid=23179724 polypeptide=Lus10041297 locus=Lus10041297.g ID=Lus10041297.BGIv1.0 annot-version=v1.0 MEPSHPNSSVSSSSTTNPTPIPNSILASVPVWPTIDGPLGLTEDESLTYARRFYGFGYALLPWLWAVNCFYFWPVLRHSRSFPLIRPYVMKSAIGFWVFT SVLCSWAFTFAIGGEQLFGPVWDKLVMYNLADRLGLTGWI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09310			unknown protein		Lus10041297 [exp]	0	1
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	1.4	0.7621
AT5G16380			Protein of unknown function, D...		Lus10026841 [exp]	2.0	0.7392
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	4.2	0.7357
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	4.6	0.7180
AT3G53390			Transducin/WD40 repeat-like su...		Lus10000150 [exp]	8.9	0.7018
					Lus10038255 [exp]	17.3	0.7201
AT2G28105			unknown protein		Lus10016142 [exp]	18.2	0.6567
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10029622 [exp]	20.2	0.7217
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	21.4	0.6750
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	25.3	0.6830

Compare expression of checked genes

Lus10041297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.