Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60550 531 / 0 ATSNAK1, GRIK2 geminivirus rep interacting kinase 2 (.1) AT3G45240 530 / 0 ATSNAK2, GRIK1 geminivirus rep interacting kinase 1 (.1.2.3) AT3G29160 150 / 2e-41 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT3G01090 152 / 4e-41 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT2G25090 150 / 1e-40 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G35410 147 / 7e-40 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT1G30270 145 / 9e-39 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G39440 145 / 1e-38 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT2G26980 140 / 8e-38 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G10930 141 / 1e-37 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037414 [exp] 800 / 0 AT5G60550 533 / 0.0 geminivirus rep interacting kinase 2 (.1) Lus10012696 [exp] 149 / 7e-40 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10001290 [exp] 149 / 6e-39 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10007283 [exp] 145 / 9e-39 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10024075 [exp] 143 / 4e-38 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10022749 [exp] 142 / 5e-38 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 142 / 6e-38 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10035801 [exp] 143 / 1e-37 AT3G01090 920 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10018334 [exp] 139 / 8e-37 AT3G17510 441 / 6e-153 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012900 [exp] 583 / 0 AT5G60550 535 / 0.0 geminivirus rep interacting kinase 2 (.1) Potri.001G010700 [exp] 366 / 6e-126 AT3G45240 370 / 1e-127 geminivirus rep interacting kinase 1 (.1.2.3) Potri.003G215201 [exp] 367 / 3e-125 AT5G60550 330 / 1e-110 geminivirus rep interacting kinase 2 (.1) Potri.004G115900 [exp] 152 / 2e-41 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.017G087900 [exp] 152 / 4e-41 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.016G133500 [exp] 144 / 1e-38 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G062800 [exp] 142 / 1e-37 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.006G263500 [exp] 141 / 2e-37 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.019G048800 [exp] 139 / 5e-37 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.003G181900 [exp] 140 / 6e-37 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041298 pacid=23179674 polypeptide=Lus10041298 locus=Lus10041298.g ID=Lus10041298.BGIv1.0 annot-version=v1.0 ATGCCTATTCCTGTGAGAAATCATAACATTTCTCAGGAATTATTGTTAGATGAAGAGATCGACGACGAGGACAACTGGTCATACAATGGGGAAATTACAG ACTCTGTCTATGGAGTTGATGAGATGATCCCATGCTTTGCCAATCGGTCTGAGGAAATCCTGAAAGTCAAAGAGCAAAGCGGAATGGTTTGCAGACAATT TCCTGTCAAGGAAACCCGTATACTAGTTCGTTCTGAGGATGAGCATGGAAATAAGATGATTAATGAGTATGTTCGTGAATGTAAGATTGGTGCTGGTAGC TATGGTAAAGTGGTATTGTATCGTAGTAGTATAGATGGAAAGCATTACGCAATAAAGGCCTTTCACAAGTCGCATCTTTTGAAGCTTAGAGTTGCACCGT CTGAGACAGCAATGACTGATGTTCTCCGAGAGGTTCTCATCATGAAGATGTTGGAACATCCAAATATAGTCAATCTCATTGAGGTGATTGATGACCCAAA CACAGATCACTTCTACATGGCTTTGTTGTCTGTTGCACCAGTTCTTGAATACGTGGACGGGAAATGGTTTTGGGAAGGCTGTGGACCACCTGGGGGTATT GGAGAACACACTGCTAGGAAGTACTTGCGGGATATTGTTTCTGGCCTTATGTATCTCCATGCCCATAATATAGTACACGGTGATATCAAGCCTGACAACC TATTGGTTACCAGCACTGGGGTTGTTAAAATTGGAGATTTTAGCGTCAGCCAAGTATTTGAGGATGAGAACGATGAACTCCGAAGATCTCCTGGGACTCC GGTATTCACTGCACCAGAGTGCTGTCTAGGATTAACTTATCATGGGAAAGTGGCTGACACTTGGGCTGTTGGAGTAACATTATACTGTATGGTTCTTGGA CAGTACCCCTTTCTCGGAGAAACACTGCAGGACACATATGACAAGATCGTCAATAACCCCTTAGTGCTACCTAATAGGCTGGATTCCCGGCTGAAGGACT TACTCGAAGGTCTTCTTTGCAAAGACCCGAAACAAAGGCTGACGTTGGATGATGTAGCCAATCATGCTTGGGTCGTTGGAGAAGACGGCCCAATCCCCGA GTACCCATGTTGGTGCAGACGCATTCGCTTGAATTGTGAACAGTCTGATGGGAGCAGCAGCATTGAAGACGAGTCTGCTCAGAAAGAAGTCAACAAATCT CACATGACCGACACTGACTAA
AA sequence Show only first row Show all	>Lus10041298 pacid=23179674 polypeptide=Lus10041298 locus=Lus10041298.g ID=Lus10041298.BGIv1.0 annot-version=v1.0 MPIPVRNHNISQELLLDEEIDDEDNWSYNGEITDSVYGVDEMIPCFANRSEEILKVKEQSGMVCRQFPVKETRILVRSEDEHGNKMINEYVRECKIGAGS YGKVVLYRSSIDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPNTDHFYMALLSVAPVLEYVDGKWFWEGCGPPGGI GEHTARKYLRDIVSGLMYLHAHNIVHGDIKPDNLLVTSTGVVKIGDFSVSQVFEDENDELRRSPGTPVFTAPECCLGLTYHGKVADTWAVGVTLYCMVLG QYPFLGETLQDTYDKIVNNPLVLPNRLDSRLKDLLEGLLCKDPKQRLTLDDVANHAWVVGEDGPIPEYPCWCRRIRLNCEQSDGSSSIEDESAQKEVNKS HMTDTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	0	1
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	3.2	0.8932
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	4.9	0.9263
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	11.0	0.8948
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	11.5	0.8917
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	12.2	0.9090
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10010982 [exp]	12.8	0.8378
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008958 [exp]	13.5	0.9035
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	14.3	0.9026
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	14.4	0.8507
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	15.9	0.8964

Compare expression of checked genes

Lus10041298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.