Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60570 559 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 345 / 1e-116 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 341 / 2e-114 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 334 / 6e-112 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 327 / 5e-109 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27150 226 / 3e-70 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 196 / 6e-59 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 92 / 1e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 92 / 1e-20 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 83 / 2e-17 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037413 [exp] 726 / 0 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030489 [exp] 352 / 5e-119 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10012841 [exp] 352 / 6e-119 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10036735 [exp] 331 / 6e-111 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037196 [exp] 327 / 7e-110 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10023608 [exp] 296 / 8e-98 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024239 [exp] 99 / 2e-23 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 99 / 1e-22 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 98 / 4e-22 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077800 [exp] 449 / 3e-157 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.019G042100 [exp] 447 / 1e-156 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G063200 [exp] 354 / 2e-119 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G331500 [exp] 242 / 3e-76 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 239 / 6e-75 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 104 / 1e-24 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 101 / 2e-23 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G004500 [exp] 92 / 3e-20 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G211700 [exp] 88 / 4e-19 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 88 / 5e-19 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10041299 pacid=23179867 polypeptide=Lus10041299 locus=Lus10041299.g ID=Lus10041299.BGIv1.0 annot-version=v1.0 ATGGAAGGGGGACAAAGGGTAGTCAGTCATCAAACAATAAGGAGTAGGGAAGGAGTGAGTGATGGTCGTTTGAGACTTGGATCAAGTGATTCACTCCTTC CTGGGCTTGTCGACGACGTTGCATTGAATTGTCTCGCGTGGACCTGTAGATTAGACCATTCCTCTTTGTCCTGTATAAACAAGAGGTTTAATAAGTTAAT CACAAGTGGGTATTTATATGGGTTGAGGAAGCAATTGGGTATCATAGAGCATTGGGTATACTTGGTTTGTGATCCAAGGGGGTGGGAGGCATTTGATCCA ACGAGGAAAAAATGGATGGCGCTGCCAAGGATACCCTGTGATGAGTGTTTCAATCATGCTGACAAAGAGTCTTTGGCTGTGAGCGATGAATTGTTGGTGT TTGGGCGTGAGTTGTTTGATTTTGCGATTTGGAAGTATAGTTTGGTTAGTCGCAGCTGGGTTAAGTGTGATGGAATGAACCGTCCCCGTTGTTTGTTTGG GTCAGGCAGCTTTGGTTCAATTGCTATTGTTGCAGGAGGCAGTGATAAGAATGGAAAGATCTTGCAATCAGCAGAGCTCTATGACTCATCGACAGGGAGA TGGGAAATGCTCCCGAACATGCATTCACCACGTCGACTGTGCTCGGGATTTTTCATGGATGGAAAATTCTACGTGATCGGTGGTATGTCGAGTCCCACCA CATCCTTGACTTGTGGGGAGGAGTACGACCTGGAGAAAAGGAAATGGAGGAAAATAGAGGGAATGTATCCCAATGTCAATAAAGCCGCTCAGGCTCCTCC TCTTGTTGCAGTGGTTGATAACCAGTTATATGCAGTGGAGTATCTAACTAACATGGTGATGAAATACGACAAGCAGAAAAACACTTGGAATGTGTTGGGG AGGCTTCCTGTGAGGGCAGACTCTTCAAACGGTTGGGGTTTGGCTTTCAAGGCTTGCGGGGAGCAACTGCTGGTTGTGGGTGGGCAAAGGGGACCTGAAG GTGAAGGAATCGTTCTGAATGCATGGTGTCCGAAATCAGGAGTGAATAATGGCACCTTGGATTGGGAGGTTATTGGTGTGAAGGAGAATGCTGGGGTGTT CGTCTACAACTGTGCTGTAGCTGGTTGTTGA
AA sequence Show only first row Show all	>Lus10041299 pacid=23179867 polypeptide=Lus10041299 locus=Lus10041299.g ID=Lus10041299.BGIv1.0 annot-version=v1.0 MEGGQRVVSHQTIRSREGVSDGRLRLGSSDSLLPGLVDDVALNCLAWTCRLDHSSLSCINKRFNKLITSGYLYGLRKQLGIIEHWVYLVCDPRGWEAFDP TRKKWMALPRIPCDECFNHADKESLAVSDELLVFGRELFDFAIWKYSLVSRSWVKCDGMNRPRCLFGSGSFGSIAIVAGGSDKNGKILQSAELYDSSTGR WEMLPNMHSPRRLCSGFFMDGKFYVIGGMSSPTTSLTCGEEYDLEKRKWRKIEGMYPNVNKAAQAPPLVAVVDNQLYAVEYLTNMVMKYDKQKNTWNVLG RLPVRADSSNGWGLAFKACGEQLLVVGGQRGPEGEGIVLNAWCPKSGVNNGTLDWEVIGVKENAGVFVYNCAVAGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60570			Galactose oxidase/kelch repeat...		Lus10041299 [exp]	0	1
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	1.7	0.8832
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	3.7	0.8720
AT1G16210			unknown protein		Lus10012520 [exp]	4.9	0.8628
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	5.5	0.8629
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	8.2	0.8207
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10040958 [exp]	9.2	0.8594
AT4G19950			unknown protein		Lus10038358 [exp]	9.5	0.8522
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	11.8	0.8440
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10004925 [exp]	13.1	0.7946
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	14.5	0.8304

Compare expression of checked genes

Lus10041299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.