Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09770 337 / 1e-114 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 303 / 1e-102 RING/U-box superfamily protein (.1) AT5G03200 286 / 2e-95 RING/U-box superfamily protein (.1) AT5G19080 255 / 1e-82 RING/U-box superfamily protein (.1) AT3G06140 232 / 1e-73 RING/U-box superfamily protein (.1) AT1G59560 51 / 5e-07 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT3G23280 50 / 2e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G24204 47 / 3e-06 RING/U-box superfamily protein (.1.2.3) AT2G21380 48 / 8e-06 Kinesin motor family protein (.1) AT4G03000 48 / 8e-06 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037412 [exp] 538 / 0 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10015080 [exp] 326 / 3e-110 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10023182 [exp] 321 / 1e-109 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10004419 [exp] 259 / 7e-84 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 253 / 2e-81 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10021953 [exp] 50 / 2e-06 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10010392 [exp] 48 / 2e-06 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10004813 [exp] 48 / 7e-06 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10041246 [exp] 48 / 9e-06 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128700 [exp] 351 / 2e-120 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G089000 [exp] 272 / 3e-89 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.008G202700 [exp] 254 / 7e-82 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 254 / 8e-82 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 251 / 1e-80 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 247 / 8e-79 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.006G100400 [exp] 49 / 2e-06 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.001G168700 [exp] 48 / 5e-06 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.016G116300 [exp] 48 / 5e-06 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.003G065500 [exp] 48 / 7e-06 AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041300 pacid=23179749 polypeptide=Lus10041300 locus=Lus10041300.g ID=Lus10041300.BGIv1.0 annot-version=v1.0 ATGGGAAACACCGGAAGCGTCGGCCGGAGGCACCATCCGGCACACCATCACCACAATCGTCGCAACCATCCTCGTCCGCCGTCTCCCGGAGGACAGCCTC GGGTCACCACAAGCCAATACGCCTTCGCCGCACCGTCGCAGTACCCCAACCCTAATTTGCCTACTCCCTACTACCACCACCATCCTGGGGGATCCTATTA CCACACCTCTCGCCCTGCAGCTCCCCAGAATTACCCGCCATACCCTTACGCTGCTGCTGCTCCTCCACAGCCGCCCGCCGTACCCTACGTCGACCACCAG AAGGCTGTCACGATTAAGAACGACGTGAATGTGAAGAAGGAGACGATTAGGATCGTTGAAGATGACGAGAATCCAGGATGTTTCCTTGTTTCTTTCACCT TCGATGCTACTGCTCCCGGAAGCATCACGGTCTTGTTTTTCGCAAAAGAGAGCGAGGACTGCAGCCTCGTAGCGACGAGAGAAGATGTGTTCAAGCCTGT AACCATGTCTTTCGAGCAAGGTCTTGGTCAGAAGTTTAAACAACCTTCTGGAACCGGGATTGATTTCTCAATGTTTGAGGAGGCACAGTGCAAGAATGCA AGTGATGAAGGTGTGTATCCTCTAGTGCTGAAGGCTGAGTCACGCCCTTCGGCCACTGAGGGATCAGAATCTAACAAGAACGGCAATTCCCAGATGACCT TCGCAATCTTTGATCGGAAGGAAAAAGGTAATCATGATGTCAGAGTAATGAAACAAATCCTGTGGGTGAATAATACTAGGTATGAGCTGCAAGAGATTTA TGGAATCGGGAATTCAGTCGATGTGGAGTCTGAGGAAGGTGACCAAGGAAAAGAGTGTGTAATTTGCTTGTCCGAACCTCGAGACACCACTGTTCTACCT TGCCGTCACATGTGCTTGTGCAGTGGATGCGCCAAGGTGCTGCAATTTCAAACGAATCGGTGCCCTATATGCAGGCAACCGGTAGAGCGCCTCCTGGAGA TCAAAGTGAGTGAAGTAGCAGAGAATTGA
AA sequence Show only first row Show all	>Lus10041300 pacid=23179749 polypeptide=Lus10041300 locus=Lus10041300.g ID=Lus10041300.BGIv1.0 annot-version=v1.0 MGNTGSVGRRHHPAHHHHNRRNHPRPPSPGGQPRVTTSQYAFAAPSQYPNPNLPTPYYHHHPGGSYYHTSRPAAPQNYPPYPYAAAAPPQPPAVPYVDHQ KAVTIKNDVNVKKETIRIVEDDENPGCFLVSFTFDATAPGSITVLFFAKESEDCSLVATREDVFKPVTMSFEQGLGQKFKQPSGTGIDFSMFEEAQCKNA SDEGVYPLVLKAESRPSATEGSESNKNGNSQMTFAIFDRKEKGNHDVRVMKQILWVNNTRYELQEIYGIGNSVDVESEEGDQGKECVICLSEPRDTTVLP CRHMCLCSGCAKVLQFQTNRCPICRQPVERLLEIKVSEVAEN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	0	1
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	1.4	0.7934
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	6.3	0.7198
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	7.1	0.7421
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	9.2	0.7388
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	10.7	0.6894
AT1G47790			F-box and associated interacti...		Lus10026616 [exp]	11.0	0.6553
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	11.4	0.6987
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	12.3	0.7103
AT5G16550			unknown protein		Lus10033497 [exp]	12.4	0.7114
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	12.6	0.7174

Compare expression of checked genes

Lus10041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.