Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28450 866 / 0 C3HZnF zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT5G60580 468 / 7e-152 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 361 / 6e-112 RING/U-box superfamily protein (.1) AT5G03180 282 / 1e-83 RING/U-box superfamily protein (.1.2) AT3G06330 206 / 8e-58 RING/U-box superfamily protein (.1.2.3) AT5G18760 172 / 4e-46 RING/U-box superfamily protein (.1) AT3G21300 86 / 5e-17 RNA methyltransferase family protein (.1) AT2G37950 64 / 3e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 61 / 5e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 59 / 3e-09 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037411 [exp] 1506 / 0 AT2G28450 874 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10037410 [exp] 864 / 0 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 539 / 6e-179 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 535 / 1e-177 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10026501 [exp] 380 / 5e-118 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10019931 [exp] 338 / 6e-103 AT3G09760 360 / 2e-119 RING/U-box superfamily protein (.1) Lus10012791 [exp] 204 / 1e-56 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 204 / 5e-54 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 190 / 4e-52 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013000 [exp] 1045 / 0 AT2G28450 870 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.009G013300 [exp] 507 / 2e-166 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 407 / 1e-128 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.016G022900 [exp] 351 / 4e-108 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 342 / 4e-105 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.010G014950 [exp] 212 / 7e-60 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 212 / 8e-60 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 207 / 4e-58 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.001G195300 [exp] 89 / 1e-17 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1) Potri.010G195100 [exp] 64 / 5e-11 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05958 [flax] [poplar] tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10041301 pacid=23179537 polypeptide=Lus10041301 locus=Lus10041301.g ID=Lus10041301.BGIv1.0 annot-version=v1.0 ATGCCAATGGTGTCGCCGCAATCTTCAATCGACCAACTCCCTTCCTCTTCTCCGCAACAAACTCCTCCGCCTCATACCGCCGACGGAACCTCCCCTCCTG TGCCTGCAACTGTCGATCCTCCTCAGCCAGCAGCACTCGACTCCACCGGCGCGGCCAAGCGCAAGAGGGACGAAGAAGTCCCTGAACCCGAAGCCAAACC GGATCCATCACTCCATCCCTATTATAAAACCTCACTGTGTTCCTACTTTAGGCGGGATTCGGGCTCTTGTAGTCATGGCGCTACTTGCCGATACGCTCAC AGCGAGGAGGAGCTCCGTCCACGCCCTGATAATTCTTGGGACCCTACCTCTGAGCGCGCCAAGAAGTCGTTGAAATTGGATAGCGAATTAGCCGGCGATG TTGCGGAGGAGAAGAAAGAGGAAAAGGTTGATGAAATCATGATGACTGATATGATTGCTGATGAAGGCGATGCCAATGGTGGCTGTCTGGACGTTGAGCT CAGTAAATGCCTTGTGCATTTACCCAGGAACTGGAGCACCGATCAATTGAGCAAGTTTCTTAATGAGCATGGAATTTCATTCAAGTCTGCTAAGAAGAAG AAAGGCATGACTGTGGGATTCGTTAGCTTTGAGAATGTGGAGCATTTGACAGCAGCTCTGCCGGAACTAGAGGGGAAATCTGTTGGCAACAAGAAAATAA AGGTAGCCGATGTTGTTCCTCGCTCGTATGACAAGAAGATTAGGTCGGCTATGGATTTGGCAGCAGAGGGAGAGAATGGTGTTGTATCTAAATCTTTGGA TGGTGATGGAAATGATGAAAATTTGGCTGTGGAGGGTTCCAACTCCAAGGAAAAATGTGCTCGTGATGTTGTGACTCCACTGGCTCACATGTCATATGAA GATCAGTTGGTGCATAAGATGGCCTCTCTCGGGCAGATGCTGAAAAAGCTTACTAGACATGGACGGAAAGCTTGTCCCAGTGGGATTTCTCTACCGGAAT GGATTTTGCAAGCAAGGGAGATAGGTGGTCTCCCATGCAAACTTGAGGGTATAATTGAGTCCCCGCTTGTGAACGGATATCGGAATAAGTGTGAGTTTTC AGTGGGATATTCTCTTGGAGGAAAGCCTACTGTAGGGTTTATGCTGGGAAACTTCAGGGAGGGTGTTACTGCAGTAGAAGAACCAGTGGATTGTCCAAAT GTTTCTAGTATATCTTTGAAGTATGCCTTGATCTTTCAAGAGTTCCTGCAACAGTCGAGTTTGCCTTTATGGAACAGATTTAAGAATACTGGTTTTTGGC GTCAGCTCACGGTTCGAGAAGGTAGATTACCTGGAAAGGCAGCTGATATAGAACATCCAGAGGCAAACATAGCCGAGGTTATGATTATGGTTCAGGTATC TACCAAGGGTTTTGATGAAGCAATAATAACCAGTGAACTTGAGAGAATGGCACGCTCATTTACCAACGGAGCTGCCACTAACTCTGCTCCTTTGCCTCTA ACAGCTTTGGTTCTTCAGGATCATCAAGGAATATCAAATGTTGCCCCAGCTGATGCTCCACTGCGTACATTGGACATTGCTAATGCAGAAAGTGGATCTT TAGTCAAAGATGCTGATGGTGCCGCAGAACCCAGAATTCATGATCATATAAGCAACCTACGGTTCTCTATATCCCCAACAGCGTTTTTTCAGGTCAACAC CCTTGCTGCTGAGAAACTATATGCACTTGCTGGCGATTGGGCTGATTTGGGTCCTGATACTCTGTTGTTTGATATATGCTGTGGGACTGGAACAATTGGG CTCACTTTGGCGCACCGTGTTGGTATGGTTGTTGGGATTGAGATGAATGCTTCTGCCGTTTCAGATGCCAATCGAAATGCTGAAATCAATGGCATAAAAA ACTGTAGATTTGTGGCTGGGAAGGCAGAGCATGTTATTGGTTCCCTGTTGCAAGAGTACCTGAAAATGTCTGAATTGCCAAGTTCTTCCGGAGAAACTGC CGAAGAGGTCAATATTTCTGAACAAAAGGAGTTATCCAATGCGGATGAAATAGGCGCTGACAAGAATTCAAGCGGGGAGCTTGATGGCAATGAGGCTGCT AAGGGTTTGGAAAATGGTGAACTACTCGAAAACAAACTGGATAACACGTGTTCCTCAGGAGACGCGATCTCTTCAGCTCCGAAATTCAAAAACATTGTCG CCATTGTGGATCCTCCACGGAATGGGCTTCATCCAATTGTTATCAAAGCTCTTCGAACTCACTCAGGCCTGCGTCGTCTTGTTTACATCTCATGCAATCC TGAAACATTAGTGGCGAATGCAATCGAGCTATGCACGCCATCTCCTGCCGAAACAGCAGAGAAAGGGAATAAAAACAACCGTGGATGGAGGAACATGAGC AACGCCGGATTGGCTCGCCACAGAGCTAAATCGATGCCAACTTCGGAACCATTTCATCCAGTAAAAGCAATGGCTGTTGATCTCTTCCCGCACACCCCGC ATTGTGAAATGGAGGAAGCCTCAACTGGTATGGTTGAGGAAGAAAGCAGCCAGGCAAACCATTGGAAGAAGAAAAATCTGTTTCTAGAGATACCTTCAAG AATTACGGAGGAACAAGCATCTCCTCCACAAGACAGTGTTGTCATTACGATGCCACCGATAACACCTACTCAAACTCCCAGGAAGGTCAATTTCCAATTG ACACCTACTTCTTCTGATTCAAGAGGAGGAGCCAATCGGTCTCCGGCACCTACTCCATCAAAAGGGAAGGCTTCTCTGAAGAATCTGTTGCCTAAACTAA GCTTTAAGTCTCGAATTGCTACGCTGAATGCTGCTGCTGAGAAGGCTACCTATCCAGAAGCTCCGACTACTCATCATCATCATCAAGACAAGCCTTCTAT CCCAAGGTCATTGTCCCTTACAAAGCTCTTCACTCCTAGGATGAAAAGGACTTCATCACTTCCTGTTACGCCCATTGCACATTTGTCTACCCCGGATTCT ACACACGGTGGAAGTATCAGTGGCCCTCTCATTCCAACTAGAGATGGTCCTCCACGCAAGATTGCTCGCTCGCTGTCAGTTCCTGTTAACAACAAAGATG GAAGTATACGGAGAATGGATTCTTTCTTTCGAGTGATTCCTTCAACTCCTAGATCAAAATTAGAAGCAGATATAACACCAGTGGATGTATCTTCCCCAAG TGTCACTGCCGAAACCATTGACGATGACTGTGAAGACATACCTGAAGAAGAGGCTGTTTGTAGAATTTGTCTGGTTGAACTTTGTGAAGGAGGGGAGACC CTTAAGATGGAATGCAGTTGCAAAGGTGAACTTGCTCTGGCACATCAAGAATGTGCAGTCAAGTGGTTTAGCATCAAAGGGAACAAGACTTGTGATGTTT GCAAGCATGATGTTGAAAACTTACCTGTTACTTTGTTACGGATACAAAGTAGGCGTGCTGGTATCGCTGGATTAGCTAGAGGTCAAATAGCCGATCCCGA TGGATACAGGGGTTGGCAAGAAGTTCCAGTGCTGGTAATCGTTAGCATGCTTGCCTACTTCTGTTTCCTGGAGCAGCTTCTGGTGGAGCATATGGGAACT GGTGCAATTGCCCTGTCCCTTCCATTTTCTTGTGTGCTCGGTCTCCTTTCGTCCATGATCTCGTCAACTATGGTAAAGAGACGATTCGTTTGGGTGTATG CATCAACGCAGTTTGCTTTAGTGGTCCTGTTTGCTCACATTTTCTACTCATTGGTTGGAGTGCAAGCAGTTCTGTCGATCTTGCTGGCGACATTTGCTGG TTACGGGGTGGCAATGAGTGGAAGTTCGATCATCATCGAGTTTGTGAGGTGGAGACGAAGATGGCGGAATAGAAGAAGACCAGAACAACAGCAGCTTGGA AGCCATGTGGTGATGGGAGGTGGAATTCCGAGACCTGCTGTGAGTTCATCTGCAGTAAGCACAGCTGGTTCTGGTGGTAGTACAAGGGAAGGAAGTGCAC GTACAAATGATGTAGAAAATCCATAA
AA sequence Show only first row Show all	>Lus10041301 pacid=23179537 polypeptide=Lus10041301 locus=Lus10041301.g ID=Lus10041301.BGIv1.0 annot-version=v1.0 MPMVSPQSSIDQLPSSSPQQTPPPHTADGTSPPVPATVDPPQPAALDSTGAAKRKRDEEVPEPEAKPDPSLHPYYKTSLCSYFRRDSGSCSHGATCRYAH SEEELRPRPDNSWDPTSERAKKSLKLDSELAGDVAEEKKEEKVDEIMMTDMIADEGDANGGCLDVELSKCLVHLPRNWSTDQLSKFLNEHGISFKSAKKK KGMTVGFVSFENVEHLTAALPELEGKSVGNKKIKVADVVPRSYDKKIRSAMDLAAEGENGVVSKSLDGDGNDENLAVEGSNSKEKCARDVVTPLAHMSYE DQLVHKMASLGQMLKKLTRHGRKACPSGISLPEWILQAREIGGLPCKLEGIIESPLVNGYRNKCEFSVGYSLGGKPTVGFMLGNFREGVTAVEEPVDCPN VSSISLKYALIFQEFLQQSSLPLWNRFKNTGFWRQLTVREGRLPGKAADIEHPEANIAEVMIMVQVSTKGFDEAIITSELERMARSFTNGAATNSAPLPL TALVLQDHQGISNVAPADAPLRTLDIANAESGSLVKDADGAAEPRIHDHISNLRFSISPTAFFQVNTLAAEKLYALAGDWADLGPDTLLFDICCGTGTIG LTLAHRVGMVVGIEMNASAVSDANRNAEINGIKNCRFVAGKAEHVIGSLLQEYLKMSELPSSSGETAEEVNISEQKELSNADEIGADKNSSGELDGNEAA KGLENGELLENKLDNTCSSGDAISSAPKFKNIVAIVDPPRNGLHPIVIKALRTHSGLRRLVYISCNPETLVANAIELCTPSPAETAEKGNKNNRGWRNMS NAGLARHRAKSMPTSEPFHPVKAMAVDLFPHTPHCEMEEASTGMVEEESSQANHWKKKNLFLEIPSRITEEQASPPQDSVVITMPPITPTQTPRKVNFQL TPTSSDSRGGANRSPAPTPSKGKASLKNLLPKLSFKSRIATLNAAAEKATYPEAPTTHHHHQDKPSIPRSLSLTKLFTPRMKRTSSLPVTPIAHLSTPDS THGGSISGPLIPTRDGPPRKIARSLSVPVNNKDGSIRRMDSFFRVIPSTPRSKLEADITPVDVSSPSVTAETIDDDCEDIPEEEAVCRICLVELCEGGET LKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKHDVENLPVTLLRIQSRRAGIAGLARGQIADPDGYRGWQEVPVLVIVSMLAYFCFLEQLLVEHMGT GAIALSLPFSCVLGLLSSMISSTMVKRRFVWVYASTQFALVVLFAHIFYSLVGVQAVLSILLATFAGYGVAMSGSSIIIEFVRWRRRWRNRRRPEQQQLG SHVVMGGGIPRPAVSSSAVSTAGSGGSTREGSARTNDVENP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	1.4	0.9198
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	3.6	0.8821
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	4.7	0.9140
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	6.7	0.8921
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10007854 [exp]	7.1	0.8777
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	7.3	0.9070
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	7.5	0.9028
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	8.1	0.9015
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	8.4	0.8991
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	13.0	0.8743

Compare expression of checked genes

Lus10041301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.