Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60590 261 / 8e-87 DHBP synthase RibB-like alpha/beta domain (.1.2) AT3G01920 43 / 0.0001 DHBP synthase RibB-like alpha/beta domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037409 [exp] 433 / 3e-154 AT5G60590 314 / 7e-108 DHBP synthase RibB-like alpha/beta domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G025500 [exp] 306 / 3e-104 AT5G60590 350 / 9e-122 DHBP synthase RibB-like alpha/beta domain (.1.2) Potri.001G330100 [exp] 42 / 0.0003 AT3G01920 430 / 1e-152 DHBP synthase RibB-like alpha/beta domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01300 [flax] [poplar] Sua5_yciO_yrdC Telomere recombination
Representative CDS sequence Show only first row Show all	>Lus10041302 pacid=23179596 polypeptide=Lus10041302 locus=Lus10041302.g ID=Lus10041302.BGIv1.0 annot-version=v1.0 ATGAACATTCGGGCGGCCAGAATCTCCTCCACGCTCCCACTTCTAGTCTCTCGTTCTCGCTCTTCTCATTCAGGCAAGGTTTCGCGCTCATTTCGATTGC TGCTGTGTTGCTCTATTTCTTTTACTCTTTTCTTAGCTTTGGGAATTCGAAGCACTGCCTTCTTCCCCAATCCCATCCATGGAAGGGGAGTGGTTTCTTG CTCCACAAATATGAGGGCTTTGGAGAGCTGTAACCTGGAGGAATTTCAACGTGAGGACCAATTTGGAGGAGTGGTTCGGCCTGCTGATGAAGATTATGCA GAAGAAGCTGTGGATGCTCTCCGGCATGGGAAAGTTATAGCTTCGCCCACGGATACCCTTTATGGCTTTGCTTGTGATGCTTGTTCATCTGAAGCAGTAA ACAGGATTTATGAGATCAAAGGCCGTAAGCAAACAAGTCCTCTAGCAATCTGTGTTGGGGATGTATCAGACATAGCGCGGTTTGCAGTCATTGACCACCT CCCTTCTGGCTTACTCGATTCTCTACTTCCTGGACCAGTCACGCTGATATTAAGTCGAGGAACCTCAAGTGTGCTTGAGAAGTCTCTAAACCCTGGATTG GACAGTATTGGTGTCCGGGTGCCTGACTATAACTTCATAAGGGCAGTTGCTCGAGGTTTGGGAAGCGCGATAGCGCTCACCAGTGCTAACCTGAGTGGGC AGCCAAGTAGTGTTTGCATCAAGGATTTTCAGAACCTGTGGCATCAATGTGCATGTGTGTATGACGGTGGTGTCCTTCCATCTGGACGTGCAGGATCGAC GATCGTAGATCTTACCAATGATGGAAAGTACAGGATTGTTAGACCTGGAAGTGCAAAGGAAGAGACGGTTGGAATCCTGGAAAAGCATTGGCTAGTGGAG GATGCAGGAAGCCAGTGA
AA sequence Show only first row Show all	>Lus10041302 pacid=23179596 polypeptide=Lus10041302 locus=Lus10041302.g ID=Lus10041302.BGIv1.0 annot-version=v1.0 MNIRAARISSTLPLLVSRSRSSHSGKVSRSFRLLLCCSISFTLFLALGIRSTAFFPNPIHGRGVVSCSTNMRALESCNLEEFQREDQFGGVVRPADEDYA EEAVDALRHGKVIASPTDTLYGFACDACSSEAVNRIYEIKGRKQTSPLAICVGDVSDIARFAVIDHLPSGLLDSLLPGPVTLILSRGTSSVLEKSLNPGL DSIGVRVPDYNFIRAVARGLGSAIALTSANLSGQPSSVCIKDFQNLWHQCACVYDGGVLPSGRAGSTIVDLTNDGKYRIVRPGSAKEETVGILEKHWLVE DAGSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10041302 [exp]	0	1
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	9.8	0.7952
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	10.5	0.7179
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10013603 [exp]	14.4	0.7556
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	18.0	0.7821
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	18.9	0.7207
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	20.1	0.7538
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018303 [exp]	21.8	0.7574
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	31.2	0.7720
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	31.3	0.7518
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	43.6	0.6779

Compare expression of checked genes

Lus10041302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.