Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60690 420 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 417 / 2e-147 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 416 / 3e-147 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 411 / 3e-145 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G10810 394 / 1e-138 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 384 / 1e-134 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 72 / 3e-14 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G06690 69 / 3e-13 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 65 / 7e-12 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 57 / 4e-09 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041272 [exp] 471 / 1e-168 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 464 / 4e-166 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 439 / 3e-156 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 396 / 4e-139 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 286 / 5e-96 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 286 / 7e-96 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 282 / 3e-94 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 278 / 7e-94 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 143 / 9e-43 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147700 [exp] 421 / 5e-149 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 409 / 1e-144 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 405 / 4e-143 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 293 / 1e-98 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 291 / 9e-98 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 281 / 8e-94 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 276 / 4e-92 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 77 / 7e-16 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 74 / 4e-15 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.005G207000 [exp] 74 / 9e-15 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10041303 pacid=23179583 polypeptide=Lus10041303 locus=Lus10041303.g ID=Lus10041303.BGIv1.0 annot-version=v1.0 ATGGTGGCTCTCTTCTGTCATGTGATCCACTCCAGCGTCACTTTCTTCGATACCTCCGATATCTATGGCCCTCACACCAACGAGATCCTGCTCGGCAAGG CTTTGAAGGGAGAGATTAGGGAGAAGGCTGAGTTGGGTACCAAATTCGGAATCATAAATGAACAAGGAGGGAAAGTCGGAGTTCGTGGAGACCCTGCTTA TGTAAGGGCTGCTTGTGAAGCAAGCTTGAAGATGCTTGATATTTACTGTATTGATCTTTATTACCAACATCGTGTTGACCCCACCGTTCCCATCGAAATC ACGGTTGGAGAGATGAAGAAACTAGTAGAGGAGGGTAAAATAAAGTACATTGGTCTACCAGAGGCGTCCGCTGAAACAATCAGAAGAGCTCATGCTGTTC ATCCAATAACAGCCGTCCAGGAACTCGGGATTGGGATTGTTGCCTACAGTACCCTTGGCCGTGGATTCTTTGCTTCCGGGCCTAAGCTTCTCGACAGCCT TGCTGACAGTGACTTCCGAAAGATGCAACCAAGGTTCCAGGGTGAGAACCTGGTTCACAACAAGACGCTCTTCGAGAAGGTTAGCGAAATTGCAAGCCGA AAAGGGTGCACTTCATCGCAGCTGGCACTTGCTTGGGTGCATCACCAGGGGGAAGATGTATGCCCCATTCCAGGGACATCCAAGATTCAAAACTTGAACC AGAACATTGGAGCTCTGTCTGTCAGGCTCTCTCCTGAGGAAATGGCCGAGCTAGAAGCTGTTGCTTCGGTGAAGGATGATAGATACATGGAAGGAATGGC AACATTCAAGGGAGCCGACACTCCACCTCTGTCTTCCTGGAAAACCACTTGA
AA sequence Show only first row Show all	>Lus10041303 pacid=23179583 polypeptide=Lus10041303 locus=Lus10041303.g ID=Lus10041303.BGIv1.0 annot-version=v1.0 MVALFCHVIHSSVTFFDTSDIYGPHTNEILLGKALKGEIREKAELGTKFGIINEQGGKVGVRGDPAYVRAACEASLKMLDIYCIDLYYQHRVDPTVPIEI TVGEMKKLVEEGKIKYIGLPEASAETIRRAHAVHPITAVQELGIGIVAYSTLGRGFFASGPKLLDSLADSDFRKMQPRFQGENLVHNKTLFEKVSEIASR KGCTSSQLALAWVHHQGEDVCPIPGTSKIQNLNQNIGALSVRLSPEEMAELEAVASVKDDRYMEGMATFKGADTPPLSSWKTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041303 [exp]	0	1
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	5.8	0.8040
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	10.2	0.7881
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10021248 [exp]	15.7	0.6894
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	16.1	0.7697
					Lus10016654 [exp]	27.3	0.7206
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	32.0	0.7472
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000668 [exp]	32.6	0.6503
AT4G27290			S-locus lectin protein kinase ...		Lus10037736 [exp]	34.1	0.7228
AT3G26470			Powdery mildew resistance prot...		Lus10021768 [exp]	35.9	0.6703
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10007232 [exp]	38.1	0.6968

Compare expression of checked genes

Lus10041303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.