Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60600 1252 / 0 HDS, ISPG, CSB3, CLB4, GcpE CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037407 [exp] 1418 / 0 AT5G60600 1316 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10022583 [exp] 1322 / 0 AT5G60600 1271 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10021480 [exp] 1204 / 0 AT5G60600 1162 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013400 [exp] 1286 / 0 AT5G60600 1272 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Potri.004G210400 [exp] 1285 / 0 AT5G60600 1266 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04551 [flax] [poplar] GcpE GcpE protein
Representative CDS sequence Show only first row Show all	>Lus10041304 pacid=23179943 polypeptide=Lus10041304 locus=Lus10041304.g ID=Lus10041304.BGIv1.0 annot-version=v1.0 ATGGCGACTGGAGCTGTGCCAGCATCTTTTGTGGGTCTCAAGACTGGGGAATCCACCTTGGGATTTGCTAAGAGCGTGGATTTCGTGAGAATCTCTGACT TCAGGAGGATCAAGTCCGGAAGAAGAAAAATCCCCATCATCAAATCCTCTACTGTTGAACTTCAGCCTGCCTCCGAGGGAAGCCCCTTGCTAGTTCCTAA ACAAAAATACTGTGAATCCATAAACAAGACTGTCAGAAGGAAAACCAGGACTGTGCTGGTTGGAGATGTTGCTCTTGGAAGTGATCATCCTATCAGGATT CAGACTATGACCACAACTGATACAAAAGATGTTGCTGCCACTGTTGAACAGGTGATGAAAATAGCTGATCAAGGAGCTGATATCGTTAGAATAACAGTTC AAGGGAAGAGAGAAGCAGATGCCTGTTTTGACATCAAGAACACTCTTGTGCAGAAGAACTACAATATACCTTTGGTGGCAGATATTCATTTTGCTCCATC TGTTGCGTTACGGGTTGCTGAATGCTTTGATAAGATTCGTGTGAACCCTGGAAACTTTGCTGATAGACGTGCTCAGTTTGAACAACTGGAGTACACGGAA GATGACTATCAGAAAGAACTTGAACACATTGAGCAGGTTTTCACTCCATTGGTGGAGAAATGTAAGAAGTATGGGAGAGCAATGCGTATTGGGACAAACC ATGGAAGCCTTTCAGATCGTATAATGAGTTACTATGGTGATTCACCTCAGGGAATGGTAGAATCTGCATTTGAGTTTGCAAGGATTTGCCGAAAGCTGGA CTACCATAATTTTGTCTTCTCCATGAAAGCAAGCAACCCCGTGATCATGGTCCAGGCATATCGTCGGCTTGTTGCTGAAATGAATGCTCTGGGCTGGGAT TATCCCTTGCATTTGGGTGTCACTGAAGCTGGAGAAGGTGAGGATGGAAGGATGAAATCTGCTATTGGCATTGGAACCCTCCTTCAGGATGGTTTGGGTG ATACGATTAGAGTTTCACTTACAGAACCACCAGAGGAGGAGATAGATCCTTGTAGAAGGTTGGCCAACCTTGGTATGAAGGCTGCTGAACTTCAGCAAGG AGTGGAACCATTTGAAGAAAAACACAGGCGATACTTTGATTTCCAGAGGCGAACTGGCCAATTGCCGGTGCAGAAGGAGGGTGAGGAAGTTGATTACAGA GGTGCCCTGCATCGTGATGGGTCTGTTCTGATGTCAGTTTCATTGGACCAGTTAAAGGCACCCGAACTCCTTTACAAGTCCCTTGCAGCAAAGCTTATTG TTGGAATGCCTTTCAAGGATCTTGCAACGGTTGATTCAATCTTGTTGAGAAAACTTCCTGCAGTCGACGATACTGATGCTCGTCTAGCTCTCAAGAGGTT GATCGATATTAGCATGGGTGTAATAACCCCCTTGTCCGAGCAGCTTACAAAACCGCTTCCCAATGCTATGGCTCTTGTCAATCTTAAGGAGTTGTCCACT AGTGCATACAAGCTTTTGCCTGAAGGCACTAGATTGGTCATATCTTTTCGTGGCGATGAGCCTTATGATGAACTGGAAATTCTGAAAGACATCAATGCTA CAATGATCCTCCATGATGTACCATACGGAGAAGACAAAGTTGGCAGGGTTCAGGCTGCAAGAAGGTTATTTGAGTATCTACAAGAGAATGCTCTAGATTT CCCTGTTATTCACCATATCCAGTTTCCATCTGGGGTTCACAGAGATGACTTGGTTATCCGTGCAGGAGCGAATGCTGGTTCTCTTCTGGTAGATGGCCTA GGAGATGGTATCCTTGTTGAAGCCCCAGAACAGGACTTCGATTTCCTGAGGAACACATCTTTCAACTTGCTACAAGGTTGCAGAATGAGGAACACAAAAA CGGAGTACGTCTCATGCCCGTCCTGTGGTAGAACCTTGTTTGATCTTCAAGAAATAAGTGCAGAGATTCGAGAAAAGACATCCCACTTACCCGGTGTCTC GATTGCAATCATGGGTTGCATTGTGAATGGACCTGGGGAGATGGCTGATGCAGATTTTGGATACGTTGGTGGTGCTCCTGGAAAGATTGACCTTTACGTT GGGAAGACTGTGGTGAGAAGAGCGATAGCAATGGAGCATGCTACAGATGCATTGATAGATCTGATCAAAGAACATGGACGGTGGGTGGATCCTCCAAAGG AAGAGTGA
AA sequence Show only first row Show all	>Lus10041304 pacid=23179943 polypeptide=Lus10041304 locus=Lus10041304.g ID=Lus10041304.BGIv1.0 annot-version=v1.0 MATGAVPASFVGLKTGESTLGFAKSVDFVRISDFRRIKSGRRKIPIIKSSTVELQPASEGSPLLVPKQKYCESINKTVRRKTRTVLVGDVALGSDHPIRI QTMTTTDTKDVAATVEQVMKIADQGADIVRITVQGKREADACFDIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTE DDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPQGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRRLVAEMNALGWD YPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAELQQGVEPFEEKHRRYFDFQRRTGQLPVQKEGEEVDYR GALHRDGSVLMSVSLDQLKAPELLYKSLAAKLIVGMPFKDLATVDSILLRKLPAVDDTDARLALKRLIDISMGVITPLSEQLTKPLPNAMALVNLKELST SAYKLLPEGTRLVISFRGDEPYDELEILKDINATMILHDVPYGEDKVGRVQAARRLFEYLQENALDFPVIHHIQFPSGVHRDDLVIRAGANAGSLLVDGL GDGILVEAPEQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYV GKTVVRRAIAMEHATDALIDLIKEHGRWVDPPKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10041304 [exp]	0	1
AT5G24460			unknown protein		Lus10032931 [exp]	10.2	0.7179
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	26.9	0.6841
AT5G55980			serine-rich protein-related (....		Lus10043215 [exp]	32.6	0.6707
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	35.8	0.6234
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021348 [exp]	42.0	0.6758
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	58.3	0.6606
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	86.0	0.6298
AT5G08139			RING/U-box superfamily protein...		Lus10008874 [exp]	114.9	0.5940
AT1G29530			unknown protein		Lus10015254 [exp]	116.1	0.6331
					Lus10017659 [exp]	119.9	0.6244

Compare expression of checked genes

Lus10041304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.