Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55600 289 / 3e-99 Membrane fusion protein Use1 (.1) AT1G54110 255 / 4e-86 Membrane fusion protein Use1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037405 [exp] 432 / 2e-155 AT3G55600 321 / 2e-111 Membrane fusion protein Use1 (.1) Lus10030474 [exp] 41 / 5e-05 ND 33 / 0.008
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133700 [exp] 304 / 2e-105 AT3G55600 287 / 1e-98 Membrane fusion protein Use1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09753 [flax] [poplar] Use1 Membrane fusion protein Use1
Representative CDS sequence Show only first row Show all	>Lus10041305 pacid=23180006 polypeptide=Lus10041305 locus=Lus10041305.g ID=Lus10041305.BGIv1.0 annot-version=v1.0 ATGAGAATCAGTAAAACCGAGATAGATTTGAGAAGATTGCTCGCCGCTGCGCCTCAGCAGCAAAATCAAGCTAAACTTGTACATTATGTTGCTACTTTAC GAGAACAACTGGAGCAGTTGGCTGCAGAGAGAACTCCCGATGGTTTGCCTAGAGTTTCCAAGGCTAAGGTGAATGATTATTCAGAGAAAATTGAAGCTGT TGCTTCGAAACTGGCGGCTGCATCATTGCCTGAGATTGAGGTTCCAAGGGAGCCTCTTTCTGGTTCTCCCAAGGGAAGTCATACTCTAGACGAAGAAAAT CACCTTCCGTCTTCCCCGGGATTGAGAAGGAGAAACGTACAAGTCTCAAACGTTGAAGAGAGAAGCCGTGACAATGCTCAGGTTGACACCTCTGCCCCAG TAAAATTGGATGCTGCAGCACACATGCACATTGAAAAGCACAGAAAGCTGCAGGAGGATCTGACAGACGAGATGGTGGTTTTGGCACGACAACTGAAAGA GAGCAGCCTGATGATGAGCCAGTCCGTGCAGGGTGCTGAAAAGGTACTGGATTCAACGGAGCATGCGATAGAGCAAAGCTTGGCGACAACGGGTCATGCA AATGTAAGGGCCGGGAAAGTGTTCTCACAAAGTTCGAAGACATCATGCCTCACTTGGCTTCTCCTCTTTGCCATGATCTGCATTTTCGTCATGGTTGTCC TTCTCATTCGTGTCACATAA
AA sequence Show only first row Show all	>Lus10041305 pacid=23180006 polypeptide=Lus10041305 locus=Lus10041305.g ID=Lus10041305.BGIv1.0 annot-version=v1.0 MRISKTEIDLRRLLAAAPQQQNQAKLVHYVATLREQLEQLAAERTPDGLPRVSKAKVNDYSEKIEAVASKLAAASLPEIEVPREPLSGSPKGSHTLDEEN HLPSSPGLRRRNVQVSNVEERSRDNAQVDTSAPVKLDAAAHMHIEKHRKLQEDLTDEMVVLARQLKESSLMMSQSVQGAEKVLDSTEHAIEQSLATTGHA NVRAGKVFSQSSKTSCLTWLLLFAMICIFVMVVLLIRVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55600			Membrane fusion protein Use1 (...		Lus10041305 [exp]	0	1
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	13.0	0.8910
AT3G52220			unknown protein		Lus10039101 [exp]	13.4	0.8901
AT2G32760			unknown protein		Lus10016662 [exp]	17.6	0.8843
AT4G22740			glycine-rich protein (.1.2)		Lus10024563 [exp]	17.7	0.8710
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	19.1	0.8841
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	22.6	0.8746
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	30.3	0.8804
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042919 [exp]	43.3	0.8623
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	44.7	0.8205
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	47.5	0.8452

Compare expression of checked genes

Lus10041305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.