Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037404 [exp] 96 / 3e-25 AT3G45230 62 / 2e-12 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041306 pacid=23179841 polypeptide=Lus10041306 locus=Lus10041306.g ID=Lus10041306.BGIv1.0 annot-version=v1.0 ATGCCGACCAAGTCTTCTTCCGTTCTACTCTCCTTCCTTCTCTGTTGCTATCTCTCACTCAGCGCCGTCGTCACCGCACAGTCTCCTCCGATTCCTTCTC CAGGACCCTCTCCGGCCGCAGATTCCGATTCCCCATTGTTGTCTCCTTCTCATTCTCCATCTCCACTTTCCAGATCTCCCTCTCCTTCTCCGTCTCCTGT CACCAACTCCCCTCACCACTCACCTCCGGCTCCTCCGTCATCAGATCTACACTCCCCTGCCTCTGCTCCTTCTCCGGTTCAAACTCCTTCTCCCGTTGAA GCTGTTGGTGGAAGCAAGAGCGCGGATGCAGAAGCTGCGGATGTCAATCAGGCAGGTGATTCATCGTCGTCGTCGTCGTCGTTATCCTCCGGGAAAAAGG CCGGAATTGCCGTCGGGGTCGTGGCGGCGGTTTCCGCGGTAGGGTTTGGAGGGTTGATTTACCGCAAGAGGCAGCAGAATGTGAGAAGGGCGCAGTATGG TGGATACAGCGGCGGCGGTGTAGAACTGCTGTGA
AA sequence Show only first row Show all	>Lus10041306 pacid=23179841 polypeptide=Lus10041306 locus=Lus10041306.g ID=Lus10041306.BGIv1.0 annot-version=v1.0 MPTKSSSVLLSFLLCCYLSLSAVVTAQSPPIPSPGPSPAADSDSPLLSPSHSPSPLSRSPSPSPSPVTNSPHHSPPAPPSSDLHSPASAPSPVQTPSPVE AVGGSKSADAEAADVNQAGDSSSSSSSLSSGKKAGIAVGVVAAVSAVGFGGLIYRKRQQNVRRAQYGGYSGGGVELL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45230			hydroxyproline-rich glycoprote...		Lus10041306 [exp]	0	1
					Lus10040587 [exp]	1.0	0.9713
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	1.7	0.9507
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	4.0	0.9532
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10018016 [exp]	5.5	0.9243
AT2G34700			Pollen Ole e 1 allergen and ex...		Lus10014013 [exp]	5.8	0.9206
AT2G01610			Plant invertase/pectin methyle...		Lus10038645 [exp]	7.3	0.9350
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	9.2	0.9442
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	9.5	0.9201
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	10.4	0.9494
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	10.7	0.9195

Compare expression of checked genes

Lus10041306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.