Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60640 514 / 4e-178 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 308 / 3e-98 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G52260 151 / 2e-39 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 137 / 2e-34 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G77510 130 / 4e-32 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G21750 120 / 5e-29 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT2G47470 86 / 6e-18 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 82 / 2e-16 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 81 / 5e-16 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G35620 73 / 1e-13 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037403 [exp] 473 / 5e-161 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 390 / 4e-129 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 382 / 5e-126 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 130 / 4e-32 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10029681 [exp] 122 / 2e-29 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 120 / 6e-29 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 118 / 1e-27 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025792 [exp] 108 / 5e-25 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Lus10031522 [exp] 89 / 2e-18 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013600 [exp] 407 / 9e-136 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.008G040100 [exp] 210 / 2e-61 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.010G222100 [exp] 201 / 1e-58 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.001G183500 [exp] 131 / 2e-32 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.002G082100 [exp] 128 / 1e-31 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 124 / 5e-30 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G198300 [exp] 91 / 2e-19 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 88 / 1e-18 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 84 / 5e-17 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.019G082400 [exp] 83 / 9e-17 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10041307 pacid=23179843 polypeptide=Lus10041307 locus=Lus10041307.g ID=Lus10041307.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCTCAGCCTCCATCTTCAATATTATCCTCCCTTATCCTCCTCCTTCTCTTCTTCTTCTTCTTCATCTTCTCATCTTCACCTCCATTCTCCT CCGTTGCTGCTGCTGAAGAAGACATTACTACCAGAGCACCCCACGGCATACAGAACCAGACCCCACTTACCTTCTCCCCCACAACCGCCGCCGAGTTCTT CCGCCACCAACAACAACTTCCCACCGCAGACGACGTCACCGACCAACCATGTTCCAAATTACCATCCAGCCCCGGCTGCACCACTCCTCCTCTGCCCGTG GCTGCCAGGGTGTCCACTGCAATGGAGACCAGTGGCGGCGGGAGTGAGGTGGGTGGTGGGGGTATTGTGGGGATAGTGCTTGGTGTGGCGGTTGCTGTGT GCTTGGCTATAGGTGGTGTGTACTATGTGGTCACCACTCGTAGAGCTAATAACGTGACAAAAGGCAGTAACGGCTCTGTTCAGACTGATCATGGCAATTT CGGCGATTTCGTCAAGGATAACAAGTTCGTGCTGGTTGAGTTCTATGCTCCCTGGTGCGGCCACTGCCAGCAGCTTGCACCCGAGTATGCGGCGGCGGCG ACGGAGTTGAAAGGAGAGGACGTGGCTTTGGCTAAAGTCGATGCCACGGAGGAGAACGAGCTGTCTCAGGAGTATGATGTGCAGGGTTTCCCTACTATCT ATTTCTTATCCGATGGTGTTCACAAGCCTTACTCTGGCCAGAGGACCAAAGATGTTATTGTTGCGTGGATTAAGGAGACTGGACCTGGAATCTTCAACAT CACCACATTGGATGATGCAGAGCGGATTTTAGCTTCCGACTCCAAAGTCGCCTTGGCTTACCTTAACTCCTTGGTGGGTCCTGAGAGTCAAGAGCTTGCT GCTGCTTCAAGGCTTGAAGATGATGTTAACTTCTATCAAACTGTTAACCCTGATGTCGCCAAGCTTTTCCATCTCGACCCTGAAGCTAAACGTCCTGCAT TGGTCATGATAAAAAAGGAGGCTGAGAAATTGAGCTTTTTTGGTACGTCGTTTGTCTTTTCCTTCTCTCCAGACGGGAACTTCTCCAGGTCTGTCATAGT GGAGTTTGCATTTGCCAACAAGCTTCCTCTGGTTACCATTTTCACCAGGGAAAATGCTCCATCAGTTTTTGAGAGTGAAATCAAGAAGCAGCTAATTTTA TTTGCTGGCAAGAACGACTCAGAGAAAGTTCTTCCACAATTTCAAGAAGCTGCTAAACTGTTTAAAGGCTCATCTGTGTATTTGTGGATTCGGACAATGA AGATGTTGGGAAACCAGTCGCTGAATATTTTGATCTATGCACCTTGGTGTGGGCATTGCCAATCACTGGAGCCAATTTACAACAAACTTGCTAAACATTT GAGGGGCGTTGACTCGATTGTCATAGCTAAGATGGACGGCACGACAAATGAACACCCCAGGGCAAAGTCTGATGGGTTCCCCACACTTCTTTTCTTCCCT GCCGGCAACAAGAGCTTCGACCCAGTGACTGTAGACGCAGACAGAACTGTGGTGGCATTCTACAAGTTCATCAAGAAACATGCATCCATCCCCTTCAAGC TCCAAAAACCAGCATCCCCTACAAGTTCTTCTTCGACACCGAAGCCAGCATCCGAGACAGAGAGTTCCAACGTCCTGAAGGAAGGTCAGGAGAGTGGCAG AAACAACGATGAGAAGGACGAATTGTGA
AA sequence Show only first row Show all	>Lus10041307 pacid=23179843 polypeptide=Lus10041307 locus=Lus10041307.g ID=Lus10041307.BGIv1.0 annot-version=v1.0 MAPPQPPSSILSSLILLLLFFFFFIFSSSPPFSSVAAAEEDITTRAPHGIQNQTPLTFSPTTAAEFFRHQQQLPTADDVTDQPCSKLPSSPGCTTPPLPV AARVSTAMETSGGGSEVGGGGIVGIVLGVAVAVCLAIGGVYYVVTTRRANNVTKGSNGSVQTDHGNFGDFVKDNKFVLVEFYAPWCGHCQQLAPEYAAAA TELKGEDVALAKVDATEENELSQEYDVQGFPTIYFLSDGVHKPYSGQRTKDVIVAWIKETGPGIFNITTLDDAERILASDSKVALAYLNSLVGPESQELA AASRLEDDVNFYQTVNPDVAKLFHLDPEAKRPALVMIKKEAEKLSFFGTSFVFSFSPDGNFSRSVIVEFAFANKLPLVTIFTRENAPSVFESEIKKQLIL FAGKNDSEKVLPQFQEAAKLFKGSSVYLWIRTMKMLGNQSLNILIYAPWCGHCQSLEPIYNKLAKHLRGVDSIVIAKMDGTTNEHPRAKSDGFPTLLFFP AGNKSFDPVTVDADRTVVAFYKFIKKHASIPFKLQKPASPTSSSSTPKPASETESSNVLKEGQESGRNNDEKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10041307 [exp]	0	1
AT2G04480			unknown protein		Lus10032584 [exp]	4.9	0.9311
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	6.2	0.9455
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10011561 [exp]	7.1	0.9370
AT2G01610			Plant invertase/pectin methyle...		Lus10038645 [exp]	9.2	0.9209
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	12.2	0.9307
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	15.3	0.9229
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	15.7	0.8913
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	16.2	0.9165
					Lus10016903 [exp]	17.9	0.9115
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	20.8	0.9193

Compare expression of checked genes

Lus10041307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.