Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60670 305 / 5e-108 Ribosomal protein L11 family protein (.1) AT2G37190 301 / 2e-106 Ribosomal protein L11 family protein (.1) AT3G53430 301 / 3e-106 Ribosomal protein L11 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037402 [exp] 325 / 6e-116 AT5G60670 300 / 4e-106 Ribosomal protein L11 family protein (.1) Lus10023186 [exp] 320 / 6e-114 AT5G60670 309 / 1e-109 Ribosomal protein L11 family protein (.1) Lus10026506 [exp] 320 / 6e-114 AT5G60670 309 / 1e-109 Ribosomal protein L11 family protein (.1) Lus10019935 [exp] 320 / 6e-114 AT5G60670 309 / 1e-109 Ribosomal protein L11 family protein (.1) Lus10015086 [exp] 139 / 2e-43 AT3G53430 134 / 5e-42 Ribosomal protein L11 family protein (.1) Lus10015085 [exp] 97 / 2e-27 AT5G60670 95 / 4e-27 Ribosomal protein L11 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145506 [exp] 310 / 4e-110 AT2G37190 299 / 1e-105 Ribosomal protein L11 family protein (.1) Potri.018G145504 [exp] 310 / 4e-110 AT2G37190 299 / 1e-105 Ribosomal protein L11 family protein (.1) Potri.018G146600 [exp] 310 / 4e-110 AT2G37190 299 / 1e-105 Ribosomal protein L11 family protein (.1) Potri.018G145200 [exp] 310 / 4e-110 AT2G37190 299 / 1e-105 Ribosomal protein L11 family protein (.1) Potri.006G077200 [exp] 308 / 3e-109 AT2G37190 295 / 7e-104 Ribosomal protein L11 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03946 [flax] [poplar] Ribosomal_L11_N Ribosomal protein L11, N-terminal domain PF00298 [flax] [poplar] Ribosomal_L11 Ribosomal protein L11, RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10041308 pacid=23179906 polypeptide=Lus10041308 locus=Lus10041308.g ID=Lus10041308.BGIv1.0 annot-version=v1.0 ATGCCGCCCAAATTCGACCCATCCCAGGTCGTCGACGTCTTCGTCCGCGTCACCGGCGGCGAAGTAGGTGCGGCCAGTTCCCTCGCCCCGAAGATCGGTC CTCTCGGTCTGTCTCCGAAGAAAATCGGAGAAGACATCGCGAAGGAGACTACCAAGGAATGGAAGGGCCTCCGCGTAACAGTCAAGCTCACCGTACAGAA TCGTCAGGCGAAGGTCACCGTTGTTCCGTCTGCCGCCGCTCTGGTCATCAAGGCCCTGAAGGAGCCAGAGAGGGACAGGAAGAAGACCAAGAATATCAAG CACAACGGAAACATTTCCCTCGACGACGTCATCGAGATCGCCAAGGTGATGAAGCCCAGGTCAATGGCTAAGGATCTCAGCGGCACGATTAAGGAGATTC TGGGTACTTGCGTATCGGTTGGGTGCACCGTTGATGGAAAGGATCCCAAGGACTTGCAGCAGGAGATTAATGATGGCGATGTCGAGGTGCCGCTTGAATG A
AA sequence Show only first row Show all	>Lus10041308 pacid=23179906 polypeptide=Lus10041308 locus=Lus10041308.g ID=Lus10041308.BGIv1.0 annot-version=v1.0 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETTKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIK HNGNISLDDVIEIAKVMKPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	0	1
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10034378 [exp]	4.2	0.9393
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	4.2	0.9332
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	4.4	0.9583
AT5G05520			Outer membrane OMP85 family pr...		Lus10017441 [exp]	4.9	0.9444
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	5.3	0.9564
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10018109 [exp]	5.4	0.9202
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	7.0	0.9416
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032962 [exp]	7.7	0.9367
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	8.0	0.9348
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	8.1	0.9531

Compare expression of checked genes

Lus10041308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.