Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60680 138 / 4e-42 Protein of unknown function, DUF584 (.1) AT2G28400 130 / 4e-39 Protein of unknown function, DUF584 (.1) AT3G45210 125 / 2e-37 Protein of unknown function, DUF584 (.1) AT5G03230 124 / 1e-36 Protein of unknown function, DUF584 (.1) AT4G04630 82 / 4e-20 Protein of unknown function, DUF584 (.1) AT4G21970 81 / 8e-20 Protein of unknown function, DUF584 (.1) AT1G11700 72 / 5e-16 Protein of unknown function, DUF584 (.1) AT4G21930 69 / 7e-15 Protein of unknown function, DUF584 (.1) AT3G15040 66 / 2e-13 Protein of unknown function, DUF584 (.1) AT1G61930 64 / 5e-13 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021474 [exp] 164 / 5e-52 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 130 / 4e-39 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 111 / 2e-31 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10015087 [exp] 104 / 8e-29 AT5G03230 87 / 6e-22 Protein of unknown function, DUF584 (.1) Lus10026507 [exp] 106 / 3e-28 AT5G03230 97 / 1e-24 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 80 / 5e-20 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 82 / 1e-19 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 81 / 2e-19 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 81 / 2e-19 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014100 [exp] 161 / 5e-51 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 157 / 3e-49 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 119 / 2e-34 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 109 / 9e-31 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 84 / 2e-20 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 82 / 5e-20 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 81 / 2e-19 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 81 / 3e-19 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 59 / 6e-11 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 54 / 5e-10 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10041309 pacid=23179684 polypeptide=Lus10041309 locus=Lus10041309.g ID=Lus10041309.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGTAAGAGCTACTTCCCCAGGCAGAACTACCAATTCCTTCCGGTGGATCAGTACCACCACCACGACGGCTCCACTTTCGAATTCGATGAAT CCGACATCTACGACATCTACGACTCGCCCGAGTTACGGAAGCAGGTGGTTGGGTCCAGGATGAGCAAGAAGACAACGGCGACAAGGATGGGAGACCGCGC TAGATCAGGGACGCCGTCGTCGTCGCTGCCGGTGAACGTGCCGGATTGGTCGAAGATATTGAAGGACGAGTACCGGGGGAACCGTCGGGGGGTTCTAGAT GACTACGACTCCGAAGACGAGGAGTTTGACGGAGAGCGGGTGCCGCCTCACGAGTTGTTGGCGAGGGCGAGGATAGCGTCGTTGTCGGTTCACGAAGGGG CTGGGAGGACACTGAAAGGGAGGGATCTGAGTAGGGTCCGAAATGCAATTTGGGAGAAGATCGGGTTCCAAGATTGA
AA sequence Show only first row Show all	>Lus10041309 pacid=23179684 polypeptide=Lus10041309 locus=Lus10041309.g ID=Lus10041309.BGIv1.0 annot-version=v1.0 MAASKSYFPRQNYQFLPVDQYHHHDGSTFEFDESDIYDIYDSPELRKQVVGSRMSKKTTATRMGDRARSGTPSSSLPVNVPDWSKILKDEYRGNRRGVLD DYDSEDEEFDGERVPPHELLARARIASLSVHEGAGRTLKGRDLSRVRNAIWEKIGFQD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60680			Protein of unknown function, D...		Lus10041309 [exp]	0	1
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	8.7	0.8837
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	13.3	0.8748
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	19.2	0.8627
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10037484 [exp]	21.9	0.8556
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10028332 [exp]	22.8	0.8562
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	24.1	0.8597
AT1G15260			unknown protein		Lus10037547 [exp]	26.2	0.8578
					Lus10043307 [exp]	27.1	0.8588
AT5G60330			unknown protein		Lus10018274 [exp]	27.6	0.8593
AT1G70480			Domain of unknown function (DU...		Lus10013018 [exp]	31.1	0.8132

Compare expression of checked genes

Lus10041309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.