Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72100 145 / 4e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT1G22600 125 / 3e-33 Late embryogenesis abundant protein (LEA) family protein (.1) AT3G62580 68 / 2e-13 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037401 [exp] 223 / 7e-73 AT1G72100 127 / 5e-34 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10021473 [exp] 167 / 5e-48 AT1G72100 305 / 2e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10000723 [exp] 166 / 2e-47 AT1G72100 305 / 3e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10025037 [exp] 66 / 9e-13 AT3G62580 341 / 7e-121 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10010016 [exp] 66 / 1e-12 AT3G62580 340 / 3e-120 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197800 [exp] 65 / 2e-12 AT3G62580 352 / 6e-125 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041310 pacid=23179808 polypeptide=Lus10041310 locus=Lus10041310.g ID=Lus10041310.BGIv1.0 annot-version=v1.0 ATGAACAGTAACGTTCTGTCGATACTCCTACTGTTGACCACACTGCTGGCCGCCGCACTTGTCCAGTCAACGTCCACGAATAACGACGACGTCGTAGTGA AGCACGGTAGTGCTGGCAACCGAGCTGTGTCGACGGCGGATACATTTGACGATCACAGCGGCCGCCATCACAACACCAAGTTAGAAGCTCTGAAGGACAT CAATATTTTCTCCAAGACCAAACGTTCCGCATCAGAATCAGGACAACATGCCAAACACAGTACTTATAAAGGGAAGATTGCGGCCGGGATTGATTGGATA ACAAGATTGGCGAACCTGTTGTCTGCGGCGACGGCATACGGCACAACGGTGTGGATGACATTCATTTCGACACACGTGTTAGGGTCGTCAACGCTCCCGA GGCAGCAGTTTGGGATGGTACAGAGCAAGTTGTACCCGGTCTACTTCAAGACCGTGGCTTTGTCCACCGCTATTGCTCTGTTTTGCCACCTGCTCCGTTT TCCCGCCGCTATTGCTCTGTTTCCCCAACCTTTTGATCTTCAGGGGTTGAGTCTTGTGACGGCGTTGACGGTGGTTGGGGTGAACGGGCTGTGCTTGGAG CCGCTGGCGAGGAAGGCTATGCTGGAGAGGATGAAGGTTGAGAAAGAGGAAGGCAGGGGAGGCGGCGCGTGGCAGATGGGGGAGGCGGCGGAGGTTGTGG GTGGTGATGAGCGGCTGTTGACAGAAGGGGAAAAGGAGACGAGGTTGAGAGTTGGGAGGTTGGATGGGAGAGTGAAGAGGCTGAATTCGTATTCGACTTG GTTGAATCTGGTGTCGTTTTTAGGGCTTACTTGCCACCTTGTCTGCCTTGGTCATCGTCTGACCAATTAA
AA sequence Show only first row Show all	>Lus10041310 pacid=23179808 polypeptide=Lus10041310 locus=Lus10041310.g ID=Lus10041310.BGIv1.0 annot-version=v1.0 MNSNVLSILLLLTTLLAAALVQSTSTNNDDVVVKHGSAGNRAVSTADTFDDHSGRHHNTKLEALKDINIFSKTKRSASESGQHAKHSTYKGKIAAGIDWI TRLANLLSAATAYGTTVWMTFISTHVLGSSTLPRQQFGMVQSKLYPVYFKTVALSTAIALFCHLLRFPAAIALFPQPFDLQGLSLVTALTVVGVNGLCLE PLARKAMLERMKVEKEEGRGGGAWQMGEAAEVVGGDERLLTEGEKETRLRVGRLDGRVKRLNSYSTWLNLVSFLGLTCHLVCLGHRLTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72100			late embryogenesis abundant do...		Lus10041310 [exp]	0	1
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	10.6	0.7273
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	11.0	0.7700
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022313 [exp]	14.7	0.7104
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	18.2	0.7581
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001244 [exp]	18.8	0.5996
AT3G21690			MATE efflux family protein (.1...		Lus10002067 [exp]	20.3	0.7302
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10024102 [exp]	26.6	0.6066
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	38.0	0.7157
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	48.5	0.7060
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10015766 [exp]	50.4	0.7014

Compare expression of checked genes

Lus10041310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.