Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28380 164 / 2e-47 DRB2 dsRNA-binding protein 2 (.1) AT3G26932 120 / 2e-31 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 117 / 6e-30 DRB5 dsRNA-binding protein 5 (.1) AT3G62800 58 / 3e-09 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 45 / 4e-05 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000721 [exp] 234 / 1e-73 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 224 / 7e-70 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10032007 [exp] 117 / 1e-29 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10035176 [exp] 117 / 1e-29 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10008422 [exp] 44 / 0.0002 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063700 [exp] 123 / 1e-31 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 121 / 5e-31 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 114 / 5e-28 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.005G045700 [exp] 108 / 4e-26 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 43 / 0.0003 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041311 pacid=23179931 polypeptide=Lus10041311 locus=Lus10041311.g ID=Lus10041311.BGIv1.0 annot-version=v1.0 ATGAGAACTGAGTTGCTCTTACGTGTCCGTTTTGTGGCGATTTTCGAGGTTACCGTCAACTTCAACGGCAAGATTTTCGAGACTCCTCATTACTGCTCCA CCATCCGCCAGGCTGAGCACTCTGCCGCCGAACTCGCACCTAACTCCATCTCCCACCGCGGCCCTTCCCACTCTCTAGCTGCTCGGATTCTGGATGTAAC AGGTGTGTACAAGAACCTCTTACAATTAACCTCTCAGAGAATGGGTGCTTCATTGCCACAATACACAACAGTTATGTCAGATCTTGGCCCCCAATCTGCT TTTACAGGGAAAGTAGAATTCGCAGGAATTACTTCACTGGCGATCCTGCCTGACCGAGAAGCAAGCAGAGAAGCAAGCCGCAATGGCAGCTTGGTTTTCC CTAAAACAACGTTGGCCAAGGAAGAGGGAAGTTCATCATCTGAACCAGAGAACAACGACGAGCTTGAGCAGATAACAGAGAAGTTTACACCTGAAAGTCC ACGACCAACCAGATCCCAACCTGCTCCTTCAACGACATCAAGAATCCTACCTCTCATTTGTCCCAGGGAGACCAGAACGGTAACCGCATCAACAGAGAGA TATCAACACTCTAGGTTTTCCTCAACGACAACTAGCAACAGATTTACACCTCCGAGACACTCAGCAACACCTAGACAGCCAAATGTGCCAGATCATTGGG CACGTCGGCCCCAGAATCTTATGCATGCTTCTCGAGCAAATCCAGACGCCCCGGTGCAGCCATTTGGACAATGGTGTCGGTCCTCCGTGCAACCAGTGAC GATAAGACACACAGTATCGTGCTACGCTGCACCTACGCCCCGTCAGCAGCCATCCATAGGTCGTCCTCAGGTGGTCCATGCACCAAACAGACAGAATTTG CTCGTAACATACAACGGTAAAGGGAAACAAGTCACAACGTACAGATAA
AA sequence Show only first row Show all	>Lus10041311 pacid=23179931 polypeptide=Lus10041311 locus=Lus10041311.g ID=Lus10041311.BGIv1.0 annot-version=v1.0 MRTELLLRVRFVAIFEVTVNFNGKIFETPHYCSTIRQAEHSAAELAPNSISHRGPSHSLAARILDVTGVYKNLLQLTSQRMGASLPQYTTVMSDLGPQSA FTGKVEFAGITSLAILPDREASREASRNGSLVFPKTTLAKEEGSSSSEPENNDELEQITEKFTPESPRPTRSQPAPSTTSRILPLICPRETRTVTASTER YQHSRFSSTTTSNRFTPPRHSATPRQPNVPDHWARRPQNLMHASRANPDAPVQPFGQWCRSSVQPVTIRHTVSCYAAPTPRQQPSIGRPQVVHAPNRQNL LVTYNGKGKQVTTYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10041311 [exp]	0	1
					Lus10029224 [exp]	6.5	0.7012
AT1G76070			unknown protein		Lus10034552 [exp]	7.7	0.7155
AT2G34930			disease resistance family prot...		Lus10016342 [exp]	30.6	0.6592
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	53.4	0.6193
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	55.3	0.6402
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	77.1	0.6072
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10032093 [exp]	94.4	0.5802
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	113.3	0.6022
AT2G01260			Protein of unknown function (D...		Lus10017987 [exp]	115.5	0.5641
AT3G18150			RNI-like superfamily protein (...		Lus10029586 [exp]	145.1	0.5833

Compare expression of checked genes

Lus10041311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.