Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28370 256 / 5e-88 Uncharacterised protein family (UPF0497) (.1) AT2G37200 196 / 2e-64 Uncharacterised protein family (UPF0497) (.1) AT3G23200 126 / 4e-37 Uncharacterised protein family (UPF0497) (.1) AT3G53850 125 / 5e-37 Uncharacterised protein family (UPF0497) (.1) AT5G02060 106 / 2e-29 Uncharacterised protein family (UPF0497) (.1) AT3G50810 95 / 6e-25 Uncharacterised protein family (UPF0497) (.1) AT4G37235 78 / 2e-18 Uncharacterised protein family (UPF0497) (.1) AT1G49405 68 / 1e-14 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037399 [exp] 353 / 2e-126 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10021469 [exp] 293 / 1e-102 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1) Lus10000718 [exp] 289 / 9e-101 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1) Lus10004698 [exp] 119 / 2e-34 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 117 / 8e-31 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10022188 [exp] 101 / 2e-27 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10016784 [exp] 86 / 1e-21 AT3G50810 150 / 2e-47 Uncharacterised protein family (UPF0497) (.1) Lus10010881 [exp] 85 / 3e-21 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1) Lus10024355 [exp] 84 / 5e-21 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014600 [exp] 290 / 9e-102 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 281 / 4e-98 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 239 / 3e-81 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.006G090400 [exp] 127 / 1e-37 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.010G198700 [exp] 122 / 1e-35 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 111 / 2e-31 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 108 / 2e-30 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 105 / 5e-29 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 103 / 3e-28 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 72 / 3e-16 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10041312 pacid=23179607 polypeptide=Lus10041312 locus=Lus10041312.g ID=Lus10041312.BGIv1.0 annot-version=v1.0 ATGAGTGTGAGCCACGCGTCGGTTCACCCAGTGGAGGATCCTCCCACGACGGACGGTGGACACAACAACAACAACAACAATAACAATATTCCGGCGAGAA TTCGGATGAAGGATGTACAAGGGATGCCAGGGACCAAAGGGGGACTAGCTTTGCGAGTGGCTCAGTTCTTCTTTGCGACTGTCGCCCTTGTTGTCATGTC CACCACCAGTGATTTCCCTTCTGTCACTGCCTTCTGCTATCTTGTTGCAGCAGCTGGCTTACAGTGCCTGTGGAGCCTTTCTCTGGCCATTGTTGACATA TATGCCATTCTGGTGATGCGTTCCTTGCAGAATCATCAAGTTGTCTGCTTCTTTACGATCGGTGACGGGGTTACTTCCACGCTCACTTTTGCTGCAGCAT GTGCATCTGCGGGGATAACAGTCCTTATCGACAACGATCTGGGTAGCTGCGGGGATAACCACTGCCTGCAATTTGAAACAGCTACCGCAACAGCATTCAT AAGCTGGTTCATGGCCTTGCCATCCTTTCTTTTGAACTTCTGGTCGCTCGCATCGAGATAG
AA sequence Show only first row Show all	>Lus10041312 pacid=23179607 polypeptide=Lus10041312 locus=Lus10041312.g ID=Lus10041312.BGIv1.0 annot-version=v1.0 MSVSHASVHPVEDPPTTDGGHNNNNNNNNIPARIRMKDVQGMPGTKGGLALRVAQFFFATVALVVMSTTSDFPSVTAFCYLVAAAGLQCLWSLSLAIVDI YAILVMRSLQNHQVVCFFTIGDGVTSTLTFAAACASAGITVLIDNDLGSCGDNHCLQFETATATAFISWFMALPSFLLNFWSLASR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28370			Uncharacterised protein family...		Lus10041312 [exp]	0	1
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	1.4	0.8558
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032549 [exp]	3.9	0.8508
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	12.3	0.8452
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	14.3	0.8448
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	16.2	0.8433
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10030115 [exp]	16.7	0.8422
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	20.1	0.8517
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	21.6	0.7765
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	23.0	0.8085
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	23.5	0.8414

Compare expression of checked genes

Lus10041312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.