Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08010 139 / 2e-39 GATA GATA11 GATA transcription factor 11 (.1.2) AT1G08000 132 / 2e-36 GATA GATA10 GATA transcription factor 10 (.1.2) AT3G54810 121 / 3e-32 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT5G66320 119 / 2e-31 GATA GATA5 GATA transcription factor 5 (.1.2) AT2G28340 117 / 3e-31 GATA GATA13 GATA transcription factor 13 (.1) AT3G24050 117 / 5e-31 GATA GATA1 GATA transcription factor 1 (.1) AT4G34680 116 / 7e-31 GATA GATA3 GATA transcription factor 3 (.1.2) AT4G36240 115 / 1e-30 GATA GATA7 GATA transcription factor 7 (.1) AT4G32890 116 / 2e-30 GATA GATA9 GATA transcription factor 9 (.1) AT5G25830 116 / 3e-30 GATA GATA12 GATA transcription factor 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037398 [exp] 483 / 2e-174 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10021466 [exp] 186 / 9e-58 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2) Lus10016092 [exp] 184 / 5e-57 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10031096 [exp] 120 / 4e-34 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10025829 [exp] 121 / 3e-32 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10023684 [exp] 117 / 6e-32 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10037994 [exp] 120 / 2e-31 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10009227 [exp] 120 / 2e-31 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10038273 [exp] 119 / 3e-31 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211800 [exp] 176 / 1e-53 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.008G038900 [exp] 125 / 2e-33 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.010G223300 [exp] 124 / 3e-33 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.009G123400 [exp] 120 / 6e-32 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.002G142800 [exp] 118 / 8e-32 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.001G188500 [exp] 119 / 1e-31 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.014G058600 [exp] 118 / 1e-31 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.003G174800 [exp] 117 / 2e-31 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.006G237700 [exp] 118 / 1e-30 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.004G161500 [exp] 116 / 2e-30 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10041313 pacid=23179773 polypeptide=Lus10041313 locus=Lus10041313.g ID=Lus10041313.BGIv1.0 annot-version=v1.0 ATGAACGACTCTTGGTTCGACAACAACTTCTGCGAGTTAACAGATGAAATTTTTGAAAGCTTTAACTACTTGGATTTACCGATAGAGGATGTTGAACCTG CTGGTGAGGAAGAGGACTGGCGGACCAAGTTCCAGGACGTCAAGCCTCCTTCAGCTTTTCTGCCAAGTTTCTCGTCTGACATCTGCAGTGCCGGTTGCAA AGACCTGAAAAAGGAATCTTTCCAGTTCAAACAGTGTTCACCAAGCCCTGAGGAGGCATCATATGGCAGGAGCATCAGCATTCAGTGTGATTCTTCTGAG AGGAACCAGTCTCAGCACTTCAGGACCTCAAGTCCAATTTCTGTCCTCGAAAGCAGCAGCTCCTCTTGCTCGGCTGAGAACCCTAGGGTAGCGAAACGTC CTCGAAGCAAAGGTTTGCGTTCCCGGCGTTGCACTTATGAGCTGGTCAATCCTTCTTCATTTGTTAGCAGAATGCTTCCTCCACTGGGCGAGTTCCAATC TGAGTATGATTCGTACTTGGATAAGAAGATGTCATCAGGCCTTGTCGAAAACAATAGGAGGAGGAAAAGGAAGAAGAAGAATTTGATGTTGCGTTCTTCT GGCGAAACGAGGGAATGTTCGCACTGTGGGGTCTCTGAGACTCCTCAGTGGAGAGAAGGGCCATTGGGGCCGAAAACTCTGTGCAATGCCTGTGGGGTTC GTTATAGGTCTGGCCGTCTTTTCCTGGAGTACCGCCCTGCTGCCAGTCCGACCTTCAGTCCTTCGCTGCACTCGAACTCGCACAGGAAGGTTTTAGAGCT GAGGAAGAGAAGTTTTGCAGGCAGCAATGGACAGAATGGCTCAACTCCGGAAGCAAATGCCTGA
AA sequence Show only first row Show all	>Lus10041313 pacid=23179773 polypeptide=Lus10041313 locus=Lus10041313.g ID=Lus10041313.BGIv1.0 annot-version=v1.0 MNDSWFDNNFCELTDEIFESFNYLDLPIEDVEPAGEEEDWRTKFQDVKPPSAFLPSFSSDICSAGCKDLKKESFQFKQCSPSPEEASYGRSISIQCDSSE RNQSQHFRTSSPISVLESSSSSCSAENPRVAKRPRSKGLRSRRCTYELVNPSSFVSRMLPPLGEFQSEYDSYLDKKMSSGLVENNRRRKRKKKNLMLRSS GETRECSHCGVSETPQWREGPLGPKTLCNACGVRYRSGRLFLEYRPAASPTFSPSLHSNSHRKVLELRKRSFAGSNGQNGSTPEANA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10041313 [exp]	0	1
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	3.2	0.8540
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	4.1	0.8707
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	4.2	0.8620
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10010820 [exp]	8.0	0.8029
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	8.1	0.8429
AT3G22520			unknown protein		Lus10041202 [exp]	13.0	0.8661
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	16.0	0.8371
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	16.5	0.8512
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	17.0	0.8534
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	18.4	0.8349

Compare expression of checked genes

Lus10041313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.